YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71146381, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.74
Transmembrane Helix	17	36	0.94
Cytoplasmic	37	46	0.70
Transmembrane Helix	47	65	0.93
Non-Cytoplasmic	66	80	0.69
Transmembrane Helix	81	101	0.82
Cytoplasmic	102	116	0.64
Transmembrane Helix	117	137	0.77
Non-Cytoplasmic	138	140	0.42
Transmembrane Helix	141	155	0.73
Cytoplasmic	156	160	0.66
Transmembrane Helix	161	183	0.76
Non-Cytoplasmic	184	200	0.78
Transmembrane Helix	201	223	0.91
Cytoplasmic	224	240	0.73
Transmembrane Helix	241	259	0.90
Non-Cytoplasmic	260	262	0.63
Transmembrane Helix	263	283	0.76
Cytoplasmic	284	321	0.88
Transmembrane Helix	322	344	0.92
Non-Cytoplasmic	345	358	0.76
Transmembrane Helix	359	379	0.87
Cytoplasmic	380	388	0.76
Transmembrane Helix	389	413	0.90
Non-Cytoplasmic	414	426	0.74
Transmembrane Helix	427	446	0.92
Cytoplasmic	447	448	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFASEAAHQ SIDLTSHWIG YTAIAIFVLA YTLVILEEQL HLRKSKPVLL AAGLIWILIA  60
   61 AYYGSNGMPH AAEVAIRHNF LEYAELFFFL LVAMTYINAL LERDVFNSLR DWLVQKGYSY 120
  121 RALFWITGIL AFFISPIADN LTTALIMCAV VLAVGKDEPK FIAMSCINIV VGANAGGAFS 180
  181 PFGDITTLMV WQKGMVQFSE FFHLFLPSVV NFVIPALIMQ FFLPTGNPSS ETSDVTPIKK 240
  241 GGLIIVGLFI LTILTAVSFH NFLHLPPVFG MMLGLGYLKF FGYYLRRSGQ GKINDSGIPS 300
  301 TLKQEDEFDI FDKIAKSEWD TLFFFYGVIL AVGGLGFIGY LGMASEFMYG ELGATNANIL 360
  361 VGLLSAIVDN IPVMFAVLTM NPDMNHTQWL LVTLTAGVGG SLLSVGSAAG VALMGQARGH 420
  421 YTFFSHLKWT PVIALGYAAS IYVHLLIN