YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280608, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	31	0.95
Non-Cytoplasmic	32	47	0.83
Transmembrane Helix	48	71	0.84
Cytoplasmic	72	78	0.80
Transmembrane Helix	79	99	0.91
Non-Cytoplasmic	100	106	0.76
Transmembrane Helix	107	130	0.86
Cytoplasmic	131	145	0.93
Transmembrane Helix	146	168	0.90
Non-Cytoplasmic	169	187	0.91
Transmembrane Helix	188	206	0.96
Cytoplasmic	207	235	0.91
Transmembrane Helix	236	254	0.88
Non-Cytoplasmic	255	270	0.68
Transmembrane Helix	271	291	0.93
Cytoplasmic	292	299	0.80
Transmembrane Helix	300	318	0.92
Non-Cytoplasmic	319	340	0.80
Transmembrane Helix	341	360	0.93
Cytoplasmic	361	372	0.68
Transmembrane Helix	373	394	0.90
Non-Cytoplasmic	395	404	0.86
Transmembrane Helix	405	424	0.93
Cytoplasmic	425	433	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTEEKKQS NAVPMVIVAG LFFILGFATW LNGSLMPYLQ QILQLTPFQA SLILFSFYIA  60
   61 VTFTALPSAA IIRKVGYKNG MALGMGTMMI AGLLFIPAAK TQIFPLFLLA QLVMGTGQTL 120
  121 LQTAVNPYVV RIGPEESAAA RISIMGILNK GAGVVAPIVF TALILSGFSD TVGTELSQVQ 180
  181 IDAMADKLIL PYLGMALFIG ILGFAVKKSP LPELASEEEE GENKGHLKEA LSHPNLALGV 240
  241 VALFLYVAVE VIAGDTIGAF ALALGVENYS VMTSYTMGCM VLGYILGIVL IPRFISQQKA 300
  301 LMVSAVLGLA LTGGVIFGDN NSFAIADSLS FILGGAQLPD TLILIAFLGL ANAIVWPAVF 360
  361 PLALSGMGKL TSVGSALLVM GISGGAFGPL FWSLVSGTSG KAVDLQGGYI VMLPCYLFIL 420
  421 FYAIKGCKMK SWK