YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280398, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	23	0.95
Transmembrane Helix	24	45	0.94
Non-Cytoplasmic	46	65	0.92
Transmembrane Helix	66	86	0.90
Cytoplasmic	87	103	0.81
Transmembrane Helix	104	125	0.93
Non-Cytoplasmic	126	159	0.93
Transmembrane Helix	160	180	0.95
Cytoplasmic	181	205	0.92
Transmembrane Helix	206	228	0.87
Non-Cytoplasmic	229	245	0.87
Transmembrane Helix	246	268	0.88
Cytoplasmic	269	277	0.79
Transmembrane Helix	278	300	0.91
Non-Cytoplasmic	301	331	0.90
Transmembrane Helix	332	352	0.89
Cytoplasmic	353	361	0.86
Transmembrane Helix	362	385	0.85
Non-Cytoplasmic	386	416	0.87
Transmembrane Helix	417	437	0.92
Cytoplasmic	438	457	0.80
Transmembrane Helix	458	477	0.94
Non-Cytoplasmic	478	483	0.63
Transmembrane Helix	484	504	0.90
Cytoplasmic	505	519	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTSKAIAEE SEVKMPKIKF LEGVDIPVFL ISGGALVLFC ILALYDIKMV SNWVNSTFAA  60
   61 STKIFGAYWQ VLLLLTFVIG IFMAVSRTGG VVLGGLKSPE MSTFKWISII MCTLLAGGGV 120
  121 FWAAAEPMAH FTSPSPYFGG ETGTTEAAYN ALAQSFMHWG FLAWAILGSL TGVVLMYLHY 180
  181 EKGLPLKPRT LLYPVFGDKV MKGAFGTLVD SCCVLAVVAG TVGPIGFLGL QVSFGLEKLF 240
  241 GIPDTYVTQV SILVGLICIY TISAVSGVTK GIQLLSSINI ILAIFLMAFI LIFGPTAFIF 300
  301 DSYLHSFGLY LNNFIPMATY RANTAWLDWW TVFFWGWFLG YGPLMAMFVA RISRGRTIRQ 360
  361 MILTISVVAP VITCFWFTIV GGSGLAFELA TPGVISEPFT GFNLPAALLA ITEQLPFGWI 420
  421 ISFLFLILTT IFVATTGDSM TFSVSMVMTG TDSPQSSLRV FWGVMMGVMA ALLISIGSGG 480
  481 ISALQSFIVV TAVPVSLVLL PSLWNAPQIA RKMADEQGL