YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280057, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.86
Transmembrane Helix	14	33	0.95
Non-Cytoplasmic	34	41	0.83
Transmembrane Helix	42	63	0.90
Cytoplasmic	64	93	0.89
Transmembrane Helix	94	113	0.93
Non-Cytoplasmic	114	142	0.83
Transmembrane Helix	143	164	0.88
Cytoplasmic	165	172	0.81
Transmembrane Helix	173	192	0.93
Non-Cytoplasmic	193	216	0.91
Transmembrane Helix	217	241	0.85
Cytoplasmic	242	254	0.79
Transmembrane Helix	255	276	0.91
Non-Cytoplasmic	277	307	0.84
Transmembrane Helix	308	332	0.79
Cytoplasmic	333	352	0.93
Transmembrane Helix	353	372	0.95
Non-Cytoplasmic	373	381	0.68
Transmembrane Helix	382	403	0.92
Cytoplasmic	404	422	0.95
Transmembrane Helix	423	444	0.91
Non-Cytoplasmic	445	445	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTASSRDSF HSRLGFVLAA AGAAIGLGNI WAFPTQAANN GGGAFLVVYL VVTFLLALPA  60
   61 LYAEIYIGNQ AQTNPVSALA NACGKRFNKL GHSAGIIGII GAMMMLSFYT IVAGWMLSHA 120
  121 LASLAELVGL LDLSHWLSTS STLRNVIFTP IFIVLGAAIV HQGVHSGIER WSARLMPMLL 180
  181 VMLFGLIIYI LQQDGAKEGL TLYLVPDFSQ VTEPKLIISA MGQAFFSLAI GVGAMMAYGS 240
  241 YMPKGQSVGK LVLSITLLDT FIAFIAGLLI IPALFVAQHS GQEVFVDGHL IGEGQLIFNI 300
  301 LPTLFSSMGG MGLLVSFAFF SLLSIAALTS TISSTEVPVA YLIEDKAMTR KRATWLVSGL 360
  361 VFIASMFLIA FFEQLFGLVI QLLTTILQPL MSLFYFIVIG WLWKRGNQLT DIAQLNKHMS 420
  421 LKLLGFYLRF ICPILLVVVF INVAF