YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71280001, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.89
Transmembrane Helix	12	31	0.95
Non-Cytoplasmic	32	42	0.74
Transmembrane Helix	43	65	0.90
Cytoplasmic	66	85	0.95
Transmembrane Helix	86	113	0.86
Non-Cytoplasmic	114	140	0.88
Transmembrane Helix	141	161	0.95
Cytoplasmic	162	170	0.89
Transmembrane Helix	171	195	0.82
Non-Cytoplasmic	196	215	0.88
Transmembrane Helix	216	238	0.89
Cytoplasmic	239	249	0.91
Transmembrane Helix	250	271	0.91
Non-Cytoplasmic	272	307	0.92
Transmembrane Helix	308	333	0.84
Cytoplasmic	334	351	0.89
Transmembrane Helix	352	375	0.91
Non-Cytoplasmic	376	395	0.92
Transmembrane Helix	396	415	0.91
Cytoplasmic	416	443	0.88
Transmembrane Helix	444	464	0.91
Non-Cytoplasmic	465	474	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASREHFSS RIGFILAAAG SAVGIGNLVG FPVNAAKNGG GAFLLMYALF VFLICLPVMI  60
   61 AEMAVGRNTA KEPVGAFKTL SKGSKLWGAA GFLGVLTPFM IAVFYMVITV WIFGYIALTV 120
  121 TGHLDYLASD VGFGEFINSP YLYIALIAVA GIVSFILAAG VKDGIEKAAK ILMPALLTML 180
  181 ILMVVFVLSL DNAMAGVTFF LVPDINKITP SVVNGALSQA FFSLSLGMGI LLTYGSYINK 240
  241 QTNIPNSAKL VAITDTSVAF IAGLMILPAV FSFNPEVNPS ELSDSSVSLI FTFLPKIFLA 300
  301 LQTSLGYVGA SAVAAFFFLL VFFAAITSLV SIIEVPVSYL VTEKKHSRKK ALGYLTLTAG 360
  361 VLTLFATASF GMVPFFTEFT SYAGGTKSLF DVIYDVFYDT ILPLNGFLLC IFVSYRWKKK 420
  421 QLSEELSIGN ENYKGSWVEK YINFSLGTFI PVIVLLIFIN TVATKFFAAN LFGF