YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71279807, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNKIQHLHI LGICGTFMGG IAAIAKQLGF KVSGSDANVY PPMSTQLEQL GIELMSGYQV  60
   61 DNFSDDIDLV IVGNAMSRGN PMVEYMLDRN IPYTSGPQWL LENVLKDRWV LAVSGTHGKT 120
  121 TTSSMLAWIL EYAHMSPGFL IGGVPQNFSS SARLGDTPFF VIEADEYDSA FFDKRSKFVH 180
  181 YRPRTLVINN LEFDHGDIFN DLSDIQKQFH HLIRMVPSNG LILSPANEEA ITETLAMGCW 240
  241 TPTEFSNGEL QQDEPSDAGW QVEKLNAQGS EFIVKFNGKE QGVVKWDLIG DFNIDNAVMA 300
  301 IAAARHAGVP SAVSIEALAE FINTKRRFEL RGIVNNISVY DDFAHHPTAI AKTLAGVRAK 360
  361 LSQQESEQEQ VGRIFAVLEP RSNTMRSGVH KESLPKSLID ADQVFIYQGE QVTWSVSDLI 420
  421 KQCKPACQVE DNVERLVESI AQQAQAGDII VVMSNGGFAD IHNKLLNRLA NIPVPLEDA

Type	Start	End	Confidence
Cytoplasmic	1	6	0.54
Transmembrane Helix	7	25	0.58
Non-Cytoplasmic	26	479	0.96