YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71145115, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.77
Transmembrane Helix	39	56	0.51
Non-Cytoplasmic	57	63	0.67
Transmembrane Helix	64	83	0.73
Cytoplasmic	84	92	0.73
Transmembrane Helix	93	112	0.90
Non-Cytoplasmic	113	149	0.91
Transmembrane Helix	150	174	0.81
Cytoplasmic	175	192	0.89
Transmembrane Helix	193	214	0.93
Non-Cytoplasmic	215	221	0.73
Transmembrane Helix	222	242	0.89
Cytoplasmic	243	268	0.92
Transmembrane Helix	269	286	0.97
Non-Cytoplasmic	287	292	0.85
Transmembrane Helix	293	313	0.95
Cytoplasmic	314	322	0.84
Transmembrane Helix	323	340	0.97
Non-Cytoplasmic	341	368	0.92
Transmembrane Helix	369	391	0.92
Cytoplasmic	392	401	0.89
Transmembrane Helix	402	424	0.90
Non-Cytoplasmic	425	430	0.95
Transmembrane Helix	431	454	0.84
Cytoplasmic	455	460	0.75
Transmembrane Helix	461	485	0.78
Non-Cytoplasmic	486	516	0.88
Transmembrane Helix	517	536	0.93
Cytoplasmic	537	544	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKTDSIDID KQVNTDELFG HPKGLYICFA TELWERFSFY GMKYLLLLYL TKYHLFSDGE  60
   61 GLEVLGSYAG LVYTLPVIGG MLADRYLGMK KSVIFGGILL CLGHLLMAVE GHQAVQYAAG 120
  121 TILTSDLTLN NGAVLSAGTL LTETIKIQDL AALNVFYFAL SLIVVGVGFL KPNISTIVGQ 180
  181 LYSKDDPRRD SGFTIFYMGI NLGSFAATII CVYLGETYGW RYGFGAAGIG MLFGLVTFTK 240
  241 GLKYLRGLAE PPDVAVLSEK VWGLISREYL IYLTAILSLS VFWLVIQHEP VVFAAQQVLL 300
  301 VVSGVGLIGY AALKGSREEF QQMLVLMVLI GSTIVFWALF EQAAGSMTLF ADRVVERNIA 360
  361 GIEITAGQFG ALNAGFIIML ALPFAALWVW LEKFRLNPNI PIKFALGIIQ AGLGFGVLVF 420
  421 GAQFPDEAGK ISLWWLVLAY LIHTTGELCL SPVGLSAVTK LAIHRVVGLS MGVWFLATAL 480
  481 SETLAMRLGK LAAIDTQGGE LNSVSDNLII YTQLFEFLMW IGIGTGVVVL LISPLLKRGM 540
  541 HGVR