YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71145084, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.52
Transmembrane Helix	5	25	0.87
Non-Cytoplasmic	26	30	0.46
Transmembrane Helix	31	52	0.87
Cytoplasmic	53	62	0.48
Transmembrane Helix	63	85	0.85
Non-Cytoplasmic	86	104	0.49
Transmembrane Helix	105	137	0.75
Cytoplasmic	138	146	0.67
Transmembrane Helix	147	170	0.72
Non-Cytoplasmic	171	179	0.80
Transmembrane Helix	180	202	0.90
Cytoplasmic	203	220	0.87
Transmembrane Helix	221	242	0.87
Non-Cytoplasmic	243	247	0.60
Transmembrane Helix	248	266	0.91
Cytoplasmic	267	283	0.87
Transmembrane Helix	284	303	0.93
Non-Cytoplasmic	304	316	0.76
Transmembrane Helix	317	340	0.61
Cytoplasmic	341	351	0.65
Transmembrane Helix	352	375	0.91
Non-Cytoplasmic	376	390	0.64
Transmembrane Helix	391	413	0.87
Cytoplasmic	414	414	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINTVILILV IISFLMIITE DLIHINKAKT TLFFGTLCWI LAFIFPINNN LASETTHQLN  60
   61 ENLLEIATLW LFLMSAMTFV AYLNSKGFIS ALVQRILPER ISERGLMFVI AIFAFVFSSF 120
  121 ADNVTATLVS IAVVMNLQLE VKKRLKYATL IIFSVNSGGV SLITGDVTTL MIFLENKVTI 180
  181 SNLLILILPS FLGVLTLASL LSMKLSGEVK LAQTRIKIAK SDIVIALIFV LTISGTLLAN 240
  241 VLFHIPPVLT FLFGLSIMFL VANLLPNKNN QDALNYIREV EYDALLFFLG VLLLVGILKE 300
  301 IGVLNGFTQL YQYLPAITVN YLVGFMSSVI DNVPLTAALL KSGVDMKITE WLMLTYATGV 360
  361 GGSILVIGSA AGIIAMSKVK GLNFISYLRN AIYLIIAYTV GYIGVYFAAN WALA