YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71144901, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.94
Transmembrane Helix	6	25	0.92
Cytoplasmic	26	39	0.84
Transmembrane Helix	40	61	0.89
Non-Cytoplasmic	62	68	0.86
Transmembrane Helix	69	91	0.91
Cytoplasmic	92	115	0.90
Transmembrane Helix	116	137	0.94
Non-Cytoplasmic	138	153	0.82
Transmembrane Helix	154	175	0.90
Cytoplasmic	176	182	0.71
Transmembrane Helix	183	202	0.92
Non-Cytoplasmic	203	220	0.91
Transmembrane Helix	221	239	0.93
Cytoplasmic	240	258	0.83
Transmembrane Helix	259	282	0.91
Non-Cytoplasmic	283	309	0.90
Transmembrane Helix	310	331	0.93
Cytoplasmic	332	351	0.91
Transmembrane Helix	352	371	0.97
Non-Cytoplasmic	372	378	0.83
Transmembrane Helix	379	401	0.91
Cytoplasmic	402	407	0.86
Transmembrane Helix	408	428	0.88
Non-Cytoplasmic	429	437	0.78
Transmembrane Helix	438	459	0.87
Cytoplasmic	460	486	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFIDLVVIA VYFCVLVGIG IYAGSKVKNS EDYMVAGRSL SMPVLLGTLV GSAIGAAATF  60
   61 GKAGKAYEVG YAILIASVAY ILGYIVLCFL APKLQQAKID TIPGALERRY GKTMRVISAV 120
  121 VLVLAVIALF GAQLIAIGLT AEAVFSDFGI TFEHAVIIAT LVIVIYTLVG GLLAVAYNDL 180
  181 FQTIIMLIGG GLLLPLFLSI DLGDQLSSAL VSPAVDWLGG MHWGYVLSFF PIYFAFVLID 240
  241 PSIWQRVAAS KNTANLKPAF LATAAIFMFW SLVVVTLGVI AFNTLPDLAH RDSVIPTLVM 300
  301 NHMPPLVKGI CLAAIMGIII STADSALLVT GTTVSTDLFK VLKPEISDKK QLLITRITVL 360
  361 VVGIFGLIFA LQKSNIFEVM MLALAIFVSG LFVPVMAALF YKKATSSAAL ISAITGAVVQ 420
  421 LSSFAAKMQG HLPEGVEPIL LALVSSSLAM WFVSHLTYNP ATATQPLLRN VDVNLQSSSS 480
  481 IPEPVK