YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71278901, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	42	0.96
Non-Cytoplasmic	43	65	0.95
Transmembrane Helix	66	85	0.95
Cytoplasmic	86	109	0.82
Transmembrane Helix	110	128	0.72
Non-Cytoplasmic	129	158	0.72
Transmembrane Helix	159	182	0.86
Cytoplasmic	183	192	0.75
Transmembrane Helix	193	213	0.93
Non-Cytoplasmic	214	231	0.85
Transmembrane Helix	232	254	0.91
Cytoplasmic	255	264	0.84
Transmembrane Helix	265	287	0.86
Non-Cytoplasmic	288	303	0.68
Transmembrane Helix	304	326	0.81
Cytoplasmic	327	329	0.62
Transmembrane Helix	330	353	0.85
Non-Cytoplasmic	354	361	0.72
Transmembrane Helix	362	385	0.87
Cytoplasmic	386	393	0.60
Transmembrane Helix	394	413	0.74
Non-Cytoplasmic	414	574	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIISIATIRK HLALPKTSWQ ICLLAIIGGA ASALLVVLFT LTIEEIQQLY LIKRDNYNSL  60
   61 DEVSRFHLPI IGSLIILLMA WLTGYKYIRT GIPFVLHRLK VAHGIIPFKN TLNQFWGSAV 120
  121 ALASGFSVGR EGPAVHLGAA CSSYLGSVLK LPYNSTRTLC ACGIAAGIAA TFNTPIAAVI 180
  181 FVMEVVMREY KAHVFVPVML ASIVGSLITR SVFGTSHNFQ HFNTIALEQQ HYFSLILLAI 240
  241 VLGILAAAFN KYLVVIIKKS VKYHIVPRLI LAALITGTLG YLVPGAMGTG TSAIDISLTN 300
  301 NLPLGFLFSL LIAKLLMTMF ALGLGIPGGI IGPTISIGAI TGALVGAVVI QVLPGEHVSS 360
  361 DFILMGMAGF MAASLNAPLA TLLAVVELSG QLELVVPAMI VITIASIVSR QLCKNESIFI 420
  421 MQLDAQNLLY RKPPVEESLQ NIGALAVMKD NLLILEQASP RTIIGELLHS HESQLVINKE 480
  481 PTSETDQLNN YYWAQLDVEV VDDESEDIEH NLANKLILHK LIPLSHQVTL AEAYLALVEQ 540
  541 RSGAVYIYHK DINDCIGLVT FEQLRIYLLE GKLN