YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71278754, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.80
Transmembrane Helix	9	29	0.94
Non-Cytoplasmic	30	40	0.63
Transmembrane Helix	41	60	0.89
Cytoplasmic	61	67	0.51
Transmembrane Helix	68	84	0.81
Non-Cytoplasmic	85	91	0.72
Transmembrane Helix	92	112	0.95
Cytoplasmic	113	118	0.85
Transmembrane Helix	119	140	0.85
Non-Cytoplasmic	141	162	0.45
Transmembrane Helix	163	188	0.77
Cytoplasmic	189	204	0.40
Transmembrane Helix	205	227	0.79
Non-Cytoplasmic	228	244	0.49
Transmembrane Helix	245	276	0.70
Cytoplasmic	277	286	0.73
Transmembrane Helix	287	308	0.90
Non-Cytoplasmic	309	316	0.60
Transmembrane Helix	317	335	0.84
Cytoplasmic	336	348	0.60
Transmembrane Helix	349	378	0.70
Non-Cytoplasmic	379	392	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVNRIISAT VAGLVAVVIG FASSVALIYQ TVINLGGDAS LASSWILTLG LSMGITSIAL  60
   61 SFYYRVPILI AWSTPGAALL IANTQNFNLN EAIAGFMFSA LLIFLCGITG WFEKLINKLP 120
  121 FQLASAMLGG ILVNFGIDVF NQMNKAPLLV IVMFFTYLVC RQLMPKFTML FVLIISVVLA 180
  181 WQLKLMTFTA FSWQLSEFTY ISPEFNMSAV LGIGIPLFLV TMAAQNLPGI AVLKAHNYKA 240
  241 PVSSILSVTG FVNMLAAPFG GYAINLAAIT AAICMTKDVD KDPKKRYWAG ISGGGFYILM 300
  301 AISAGYLMQA FASLPNALIY SLAGMALFTT INSSIQQALS DDKMSEAAII TFLVTASNLS 360
  361 LWDISSVLWG LIAGSITLMT QSLLNRSNDK LC