YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71278639, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.67
Transmembrane Helix	5	23	0.72
Cytoplasmic	24	30	0.79
Transmembrane Helix	31	52	0.90
Non-Cytoplasmic	53	75	0.84
Transmembrane Helix	76	98	0.91
Cytoplasmic	99	108	0.82
Transmembrane Helix	109	126	0.95
Non-Cytoplasmic	127	132	0.73
Transmembrane Helix	133	152	0.92
Cytoplasmic	153	159	0.89
Transmembrane Helix	160	182	0.91
Non-Cytoplasmic	183	201	0.85
Transmembrane Helix	202	222	0.82
Cytoplasmic	223	239	0.59
Transmembrane Helix	240	261	0.74
Non-Cytoplasmic	262	268	0.76
Transmembrane Helix	269	291	0.92
Cytoplasmic	292	297	0.83
Transmembrane Helix	298	316	0.87
Non-Cytoplasmic	317	323	0.56
Transmembrane Helix	324	346	0.79
Cytoplasmic	347	363	0.87
Transmembrane Helix	364	385	0.91
Non-Cytoplasmic	386	407	0.80
Transmembrane Helix	408	427	0.92
Cytoplasmic	428	454	0.86
Transmembrane Helix	455	475	0.90
Non-Cytoplasmic	476	496	0.92
Transmembrane Helix	497	520	0.89
Cytoplasmic	521	564	0.97
Transmembrane Helix	565	585	0.92
Non-Cytoplasmic	586	600	0.89
Transmembrane Helix	601	621	0.92
Cytoplasmic	622	625	0.89
Transmembrane Helix	626	645	0.92
Non-Cytoplasmic	646	651	0.73
Transmembrane Helix	652	672	0.93
Cytoplasmic	673	688	0.83
Transmembrane Helix	689	708	0.96
Non-Cytoplasmic	709	743	0.96
Transmembrane Helix	744	764	0.91
Cytoplasmic	765	783	0.90
Transmembrane Helix	784	807	0.92
Non-Cytoplasmic	808	814	0.81
Transmembrane Helix	815	835	0.92
Cytoplasmic	836	850	0.83
Transmembrane Helix	851	870	0.95
Non-Cytoplasmic	871	893	0.89
Transmembrane Helix	894	917	0.83
Cytoplasmic	918	930	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLLWIPLLS LLGSIISSMT GKLTRNQSTG LTMLMPIIAL LMTISLAPAV FSGEVIRRTI  60
   61 SWIPLLGIDI AFRLDGLALL FVFMILGIGI LVIFYARYYL SSKDSMPKLY AYLMLFMTAM 120
  121 LGIVMSNNII QLWFFWELTS ISSFLLISYW WHKAEARKGA IMALAITGGG GLALLAGLLL 180
  181 LGNIVGSYNL DIILESKDII QAHAWYEVTL ILVLLGAFTK SAQFPFHFWL PHAMAAPTPV 240
  241 SAYLHSATMV KAGIFLLARF YPALAGTDLW FILVSLTGLT TLLFGAYVAL FKHDLKGLLA 300
  301 YSTISHLGLI TLLLGLDTQL AAVAAIFHII NHATFKASLF MATGIIDHET GTRDMRKLNG 360
  361 MWRFMPYTAT LAMVAAAAMA GVPLLNGFLS KEMFFAETLH QQLLGSMSWL IPVLATVAGA 420
  421 LAVAYSARFI HDVFFNGDPI DLPRQPSEPP RYMRVPIEIL VALCLVVGIF PNFIVDDILK 480
  481 AASFAVIGGY VPEFKVALWH GFNLPLLMSA IAVTGGVLLY TQRRYLYQYH ASLPNLDAKK 540
  541 AFDSSIYVVT KWCQRKICAI ENGSLQRYLI LMFVVVLFFA GWPLFEMSQL GGQKQLTPID 600
  601 VHNAIGASLL MIGAISTVIW YRTRMISLLM ISVVGLMVSV AFTRFSAPDL ALTQLTVEVV 660
  661 TIVLLMLALF FLPQRSPKES SSIRVLRDLG ISAGLGIVVS SICYALITRP LESISDFFLA 720
  721 NAKTGGGGTN VVNVILVDFR GFDTLGEICV LGIAALGISK LLVNLPLIMP SHDSEGRPWA 780
  781 KERYPILLAS ISQSLLPLAL MVSFYIFLRG HNLPGGGFIA GLVTAIAFIL QYIAHGSNWI 840
  841 AERLTINYRK IIASGIIIAL FTGVGSWFFG RPFMTTWFDY FDIPFIGEIE LASALIFDVG 900
  901 VYFTVVGATL MILASLGQLT TNAPKEGVKI