YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71278525, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFASLSCLS AVSHAQDALT LDDLLNQLEQ GQITQTKQNQ ARESQFKSKV NQQQDMLNDM  60
   61 SYQRDNALVL SVQLEQNFAD NEIKLANKAE ALDKRLGELK ELFGVLQQVS GDTRSKFQTS 120
  121 VISAQIPGRG QFLDEFAQSM GSSSKLASIA EIERLWFELQ REMTQSGKVT TFNREVVLAN 180
  181 GDRNNAAVTR VGGFNLISNG KYLEYIDETG TVAELIRQPS NRYLASTSDL VNSGGNTTSF 240
  241 ALDPTGGSIL SLLVQAPDLK ERVDQGGPVG YIILAIGLVG LLIALERLIS LVFIGSRVER 300
  301 QLKSAVASSD NPLGRVMQVK DNNPNLDTET LELKLSESIL REVPKLSKRL TLIKIISVVA 360
  361 PLIGLLGTVT GMINTFQAIT LFGTGDPKLM AGGISQALVT TVLGLVVAIP MVFIFAYLNG 420
  421 RSRNIVNILQ QESTGIIAER AESAELAQSQ TLAGQGA

Type	Start	End	Confidence
Signal Peptide	1	15	0.99
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	268	0.99
Transmembrane Helix	269	291	0.89
Cytoplasmic	292	350	0.97
Transmembrane Helix	351	373	0.89
Non-Cytoplasmic	374	396	0.79
Transmembrane Helix	397	418	0.93
Cytoplasmic	419	457	0.99