YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71143982, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.88
Transmembrane Helix	11	31	0.88
Non-Cytoplasmic	32	50	0.70
Transmembrane Helix	51	76	0.81
Cytoplasmic	77	84	0.60
Transmembrane Helix	85	103	0.92
Non-Cytoplasmic	104	136	0.69
Transmembrane Helix	137	159	0.86
Cytoplasmic	160	177	0.87
Transmembrane Helix	178	197	0.94
Non-Cytoplasmic	198	216	0.87
Transmembrane Helix	217	239	0.92
Cytoplasmic	240	273	0.95
Transmembrane Helix	274	292	0.93
Non-Cytoplasmic	293	297	0.80
Transmembrane Helix	298	318	0.92
Cytoplasmic	319	334	0.96
Transmembrane Helix	335	353	0.93
Non-Cytoplasmic	354	367	0.74
Transmembrane Helix	368	388	0.88
Cytoplasmic	389	394	0.70
Transmembrane Helix	395	413	0.83
Non-Cytoplasmic	414	418	0.56
Transmembrane Helix	419	444	0.79
Cytoplasmic	445	457	0.81
Transmembrane Helix	458	480	0.91
Non-Cytoplasmic	481	483	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDIQDKATP LRMLVLGPAL MLFTLLVPSP FEGMSADAWH TLGLALWMAT WWISEATPVS  60
   61 VTAFLPLIVA PIVGIAPIKV TTSSYAHPLI FLFLGGFFIS IAMERWNLHK RIALKAMSLC 120
  121 STKPSHQIGG LMLVTAFLSM WMSNTATAVM MLPIALSIIE MVKQKQNGST PENFSKPMLL 180
  181 AIAFSASIGG LATLIGTPPN ALMAAYLADS YNIEIGFAQW MIIGVPLSAV LLVLCWFILT 240
  241 KVCYQVNEGE RVDTNSMFQE KLQELGKMNK GEKLVLFFFA FAAISWIFRP LIAKMTGLAI 300
  301 SDTGIAMFVA LLLFVVPVDR KKDIRILAWE DTKKLPWGVL LLFGGGLALA SLIKKSGLAG 360
  361 YIATQLEATS NIPVIAAVLV VTITILFLTE VTSNTATAAS FLPLLGPIAV TLTDGPLMLV 420
  421 IPAALAASCA FMMPVATPPN AIVFSSGELR IADMARAGFW LNIAAIFMIV LLMLTTVPMV 480
  481 FNL