YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSTT_COLP3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.93
Transmembrane Helix	20	38	0.96
Non-Cytoplasmic	39	50	0.76
Transmembrane Helix	51	73	0.84
Cytoplasmic	74	85	0.92
Transmembrane Helix	86	108	0.93
Non-Cytoplasmic	109	143	0.96
Transmembrane Helix	144	165	0.90
Cytoplasmic	166	188	0.90
Transmembrane Helix	189	211	0.88
Non-Cytoplasmic	212	219	0.77
Transmembrane Helix	220	243	0.90
Cytoplasmic	244	296	0.82
Transmembrane Helix	297	318	0.88
Non-Cytoplasmic	319	326	0.61
Transmembrane Helix	327	354	0.83
Cytoplasmic	355	361	0.55
Transmembrane Helix	362	381	0.60
Non-Cytoplasmic	382	408	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSEKPQNES FIQKIKSTSL VSQIIVAIIL ASLLAVISPE SAKAFGMLGS LFVNALKAVA  60
   61 PILVLVLVTS AIANQKMDSS AELKPIVGLY FLGTLSAALV AVLLSFAFPT ELTLDLAGAT 120
  121 ANPPQKLTEV LATLAFKVVE NPVTAVASGN FIAVLAWGLG LGFSLKHASE SSKGMVHDLS 180
  181 EAISSVVRIV IRFAPLGIFG LVANTIATTG FSALGEYSHL VAVLLSAMLI IALLVNPLIV 240
  241 FIITKKNPYP LVFTCLKESG ITAFFTRSSA ANIPVNMALC KKLDLHEDTY SVSIPLGATI 300
  301 NMAGAAITIT VLTLAAAYSL NIEVSFATAI LLSVVASISA CGASGVAGGS LLLIPLACSL 360
  361 FGINNDVAMQ VVAIGFIIGV IQDSAETALN SSTDVVFSAA ASHHITKE