YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71143858, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.86
Transmembrane Helix	30	50	0.88
Non-Cytoplasmic	51	54	0.68
Transmembrane Helix	55	76	0.87
Cytoplasmic	77	82	0.64
Transmembrane Helix	83	101	0.82
Non-Cytoplasmic	102	107	0.76
Transmembrane Helix	108	128	0.95
Cytoplasmic	129	136	0.77
Transmembrane Helix	137	159	0.88
Non-Cytoplasmic	160	180	0.85
Transmembrane Helix	181	202	0.89
Cytoplasmic	203	208	0.84
Transmembrane Helix	209	229	0.85
Non-Cytoplasmic	230	234	0.49
Transmembrane Helix	235	253	0.40
Cytoplasmic	254	258	0.40
Transmembrane Helix	259	281	0.78
Non-Cytoplasmic	282	295	0.53
Transmembrane Helix	296	318	0.61
Cytoplasmic	319	327	0.69
Transmembrane Helix	328	349	0.87
Non-Cytoplasmic	350	354	0.68
Transmembrane Helix	355	377	0.71
Cytoplasmic	378	388	0.66
Transmembrane Helix	389	414	0.88
Non-Cytoplasmic	415	567	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRAYTGALS YPQKIVIILL NKISSQHLKG DIFGGLTAAV IALPLALAFG VSSGAGAIAG  60
   61 VYGAIFVGFF AALFGGTATQ ISGPTGPMSV VMALVFTQLI GSHPDTGLVL AFTCVILAGL 120
  121 FQILFGLLKL GKYFVMVPYP VISGFMTGIG IIIILLQISP LLGSAGDSNA LAALMNIPNA 180
  181 LSQQNTLATV LGVITLLLMI YWPEKWTKII PAPLFALITL TVISATFFSQ QGISVIGEIP 240
  241 TGFPSLSMPS LSLESLSQVS YFAFLLAVLG AIDSLLTSMV ADTLTETHHD SDKELIGQGI 300
  301 ANTIAGFFGA LPGAGATMRT AINIRAGGKT ALSGIIHSIT LLIVILWAGD YAQYIPHTVL 360
  361 AGMLIKVGLD IIDWRFIFQI KKVGLFSATL MLLVLLLTVF VDLITAVLVG MFIANLVTLD 420
  421 RLTHIQLDNI TFKRGDELLS EISSNETNIA LTDDIQNNLS KSLANTLLLE IDGPVSFAVS 480
  481 RELSRRFTEN LAFTTLVIDL SNAKLIGTTT AIMITDLIDR TKSKEKTVLV ITGNEKINQS 540
  541 LDKLSLATLL DKKYQFTNRE QALQTLI