YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71143745, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKWFKSGSP WIWLSAGGVS ISLISVLGLL WLIASRGLSY FWPSELYQFD LTDQHGAKSV  60
   61 VIGEIYDREQ IPVSQLAHLN LALDPEQEIL ERLLIKTGNR ELVSLDFRWL LSHNIQKTQT 120
  121 PKDLVVVERR THGNFYGFIE SVVVDGKEVD KNKLDELLTR VDNFQDQIDD LQKSDIGAIN 180
  181 YQLERLRLKT RKYQLQDKLT AELQVKIDSE IAALNQDYEI LENELMGYRE QISRDHIVMR 240
  241 AMDGQLVTIN FEYILKVTFN NQLNTFEKTA LFFSHIGSFL IEDPREANTE GGVFPAIFGT 300
  301 VLMVLLMTVI VSPFGVIAAI YLHEYAGKNA FTKLLRIAVI NLAGVPSIVY GVFGLGFFVY 360
  361 MVGGSLDQLF YSENLPSPTF GTPGVLWSAL TLAILTLPVV IVSTEEGLSR IPSTMRHGSL 420
  421 ALGATKAETL WRIILPIASP AIMTGIILAI ARAAGEVAPL MLVGVVKMAP NLPLDGNFPF 480
  481 LHLDRKFMHL GFHIYDVGFQ SPNVEAARPL VFATALLLVT IIVALNMTAV SIRNKLRERY 540
  541 KMLEH

Type	Start	End	Confidence
Cytoplasmic	1	10	0.87
Transmembrane Helix	11	34	0.90
Non-Cytoplasmic	35	295	0.95
Transmembrane Helix	296	322	0.86
Cytoplasmic	323	336	0.91
Transmembrane Helix	337	361	0.89
Non-Cytoplasmic	362	383	0.89
Transmembrane Helix	384	404	0.90
Cytoplasmic	405	429	0.90
Transmembrane Helix	430	454	0.87
Non-Cytoplasmic	455	509	0.95
Transmembrane Helix	510	530	0.95
Cytoplasmic	531	545	0.92