YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71277903, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	242	0.80
Transmembrane Helix	243	266	0.85
Non-Cytoplasmic	267	272	0.54
Transmembrane Helix	273	293	0.59
Cytoplasmic	294	313	0.51
Transmembrane Helix	314	332	0.88
Non-Cytoplasmic	333	357	0.71
Transmembrane Helix	358	379	0.86
Cytoplasmic	380	388	0.84
Transmembrane Helix	389	412	0.85
Non-Cytoplasmic	413	419	0.83
Transmembrane Helix	420	438	0.97
Cytoplasmic	439	475	0.89
Transmembrane Helix	476	494	0.86
Non-Cytoplasmic	495	629	0.90
Transmembrane Helix	630	652	0.84
Cytoplasmic	653	659	0.82
Transmembrane Helix	660	682	0.87
Non-Cytoplasmic	683	689	0.68
Transmembrane Helix	690	710	0.94
Cytoplasmic	711	727	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQSKHFALV GFANSGKSTL FNLLLSDSES NKKQSKQNVG NWSGVTVAAK KTSITLNNNA  60
   61 AYLSDLPGLS SLERHAEQGK DLTISQSFLQ GNDIDFLVNV VDINQLSRQL YLTSQLLELG 120
  121 VPMIVVLNKI DRQKHLDIDI SQLAAELGCP IVAISAQRDD ALKKVQQALG QLNGDLSAVH 180
  181 QKIIDNAHTE SKDKPEPNVK VMHARYDYIT DMLARVSSVE ATNAAFANPT SSNKPFSEKI 240
  241 DSLVLHPITG IPVFLGVMYL LFMFAINVGS AFIDFFDIIS GTLFVEYPLH FLAPLDLPQW 300
  301 ILTIVEGLGS GMQTVATFIP IIACLFIGLS LLESSGYLAR AAFVVDSLMQ KIGLPGKAFV 360
  361 PLIVGFGCTV PAVMSARILD SERERITTVM MSPFMSCGAR LPVYALFAAA FFPDNGQNLV 420
  421 FLLYLVGIAA AIFTGFLLKK TVLSGTTSLN IMELPQYEMP RIGALSKRVW QRTSSFVTGA 480
  481 GKTIVIVVCL LNFFNSIGID GKFGSQDSEN SVLSQGAKVV MPLLAPMGVQ EDNWQAGVGI 540
  541 ITGIFAKEVL VATFNNLYSP HASEGEGAPS LVQSWQDATD SIKENLFGIS PDDPLGISVG 600
  601 DISDLNIAAQ EQGVELTTYQ RMQLAFVSQL GAFSYLLFIL LYTPCVAAMG AIKNEVGSRW 660
  661 AGFAGIWSFV FAYLVSTLCY QIGNFLASPL SSSITIALAL LTFVLIYFWL KHKGKKVLTI 720
  721 PVRVSYS