YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71277812, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.98
Transmembrane Helix	42	62	0.94
Non-Cytoplasmic	63	78	0.91
Transmembrane Helix	79	100	0.90
Cytoplasmic	101	110	0.75
Transmembrane Helix	111	129	0.96
Non-Cytoplasmic	130	135	0.84
Transmembrane Helix	136	158	0.92
Cytoplasmic	159	166	0.89
Transmembrane Helix	167	186	0.96
Non-Cytoplasmic	187	197	0.82
Transmembrane Helix	198	220	0.88
Cytoplasmic	221	235	0.82
Transmembrane Helix	236	256	0.92
Non-Cytoplasmic	257	261	0.70
Transmembrane Helix	262	282	0.88
Cytoplasmic	283	292	0.86
Transmembrane Helix	293	315	0.90
Non-Cytoplasmic	316	331	0.87
Transmembrane Helix	332	354	0.86
Cytoplasmic	355	365	0.85
Transmembrane Helix	366	384	0.95
Non-Cytoplasmic	385	391	0.79
Transmembrane Helix	392	414	0.88
Cytoplasmic	415	428	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQIQDSESA QLNFDQPSSD HQDTNALNYL AQHPILDLPF RSYFLLAVAC SMVALGIWAA  60
   61 YFNGYFTFAE NGISPLAWHI HEMIFGFGAT VAVGFILTAA QTWTGQPSIK GLQVLAFVGL 120
  121 WLLVRAALLV NSPSTIIVAI VLQSFWWLGS IIVFTRLVLK GNNRRNYLFI PLLSALMLLN 180
  181 IALLLLDFNG YHELTRHIAR TSVLMFCLLM GILGGRVIPF FTVSGAKLEP IKTPNWLTPL 240
  241 LTITSILGVL AFFSSAFIEL PFSPAILMIA SGLLHLIRQG YWRSFATRKI ALLWSLHIAN 300
  301 FSLALGLILL GVSYFQTQSL EYFSVSISFG DALHLITIAA MGLMIFAMMS RVSLGHTGRA 360
  361 LIPSKLVSWV FFLIMFSAFT RAILPTITSQ SLLAWNISAL AWFIAGLFFL KVYLPILMAK 420
  421 KVEKSFSR