YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71277751, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.98
Transmembrane Helix	7	32	0.81
Non-Cytoplasmic	33	45	0.84
Transmembrane Helix	46	67	0.89
Cytoplasmic	68	75	0.80
Transmembrane Helix	76	95	0.95
Non-Cytoplasmic	96	101	0.81
Transmembrane Helix	102	122	0.92
Cytoplasmic	123	140	0.83
Transmembrane Helix	141	161	0.92
Non-Cytoplasmic	162	178	0.89
Transmembrane Helix	179	198	0.93
Cytoplasmic	199	226	0.90
Transmembrane Helix	227	249	0.89
Non-Cytoplasmic	250	267	0.83
Transmembrane Helix	268	284	0.95
Cytoplasmic	285	294	0.69
Transmembrane Helix	295	313	0.94
Non-Cytoplasmic	314	319	0.66
Transmembrane Helix	320	341	0.92
Cytoplasmic	342	350	0.81
Transmembrane Helix	351	372	0.90
Non-Cytoplasmic	373	377	0.81
Transmembrane Helix	378	398	0.90
Cytoplasmic	399	407	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDNKNFAFA LTSLTSLFFM WGFITCLNDI LIPHLKGVFD LSYSQAMLVQ FCFFGAYFLF  60
   61 SLPAGAIVKK LGYQKGIVLG LLIAAIGCLF FYPAASMHSY PVFLMALFIL ASGITLLQVS 120
  121 ANPYVSMLGD AKTASSRLTM TQAFNALGTT VAPFFGAFLI LNEAADALSP QTSAESVQMP 180
  181 YVFLAAMLLV LAAVFAWLKL PNLSLVEEDA QKDEQEDSGS AWQYRHLVLG AVGIFVYVGA 240
  241 EVAIGSFLVS FFAEPSIAGL EEYQAAKYIA YYWGGAMVGR FIGAAVMQKV AAGRALFFNA 300
  301 TLAVILILVA VFSSGTLAMV AILLVGLCNS IMFPTIFSLA IQGLGKHTSQ GSGILCLAIV 360
  361 GGAIIPLFQG VLADNIGVQP AFLLPIFCYF FIAYYGLSGS KVKAIAN