YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|213625815, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.50
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.50
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	62	0.91
Transmembrane Helix	63	85	0.94
Cytoplasmic	86	94	0.92
Transmembrane Helix	95	116	0.92
Non-Cytoplasmic	117	134	0.87
Transmembrane Helix	135	158	0.83
Cytoplasmic	159	172	0.88
Transmembrane Helix	173	194	0.92
Non-Cytoplasmic	195	222	0.97
Transmembrane Helix	223	247	0.90
Cytoplasmic	248	266	0.96
Transmembrane Helix	267	290	0.90
Non-Cytoplasmic	291	306	0.83
Transmembrane Helix	307	329	0.90
Cytoplasmic	330	380	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHGLIWISA LLLFIAVNLS SQTSINPNWD RGFTGEETKE GVSVTSTALG VLNSKLTQIF  60
   61 FPVLYIIVFS VGLPTNAMAI WVFLFRTKKK HPSSIFMANL ALADLLFVIW IPLKIAYHFN 120
  121 GNHWIFGEAL CKVLVGFFYG NMYCSTAFIA CISVQRYWAI VHPLSQQKRN NRLAVCVSVC 180
  181 VWLVVWALTV PLYLYDQTVK VTNMDIVTCH DVTRPSQSLY PCIYFLTMGV VGFVVPCLVC 240
  241 IVSNVQMLRA LKSSMNDPSI VQKRKKAIIL IVTVLVMFLV CFTPSNIMVM VHYALLFNGV 300
  301 KNSGYGFYIT TLCLASLNSC VDPFVYYFIS DEFREHVRNT FLCRSERTAQ RMRVSFSALK 360
  361 YSKKSSTYTS DSGNTQSSSY