YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|186920378, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.67
Transmembrane Helix	34	62	0.72
Cytoplasmic	63	71	0.63
Transmembrane Helix	72	95	0.85
Non-Cytoplasmic	96	102	0.51
Transmembrane Helix	103	122	0.95
Cytoplasmic	123	128	0.63
Transmembrane Helix	129	151	0.90
Non-Cytoplasmic	152	191	0.51
Transmembrane Helix	192	213	0.91
Cytoplasmic	214	296	0.68
Transmembrane Helix	297	322	0.85
Non-Cytoplasmic	323	409	0.80
Transmembrane Helix	410	430	0.89
Cytoplasmic	431	448	0.68
Transmembrane Helix	449	471	0.77
Non-Cytoplasmic	472	479	0.63
Transmembrane Helix	480	499	0.94
Cytoplasmic	500	546	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDQRAYARV EDESTLIKTA SKRDHELQPG PPCFVYTLAF FSALGGFLFG YDTGVVSGAM  60
   61 LLLKREKKLS SVWQELLVSI TVGAAAVSAL AGGFLNGRFG RRVCILLASF IFCAGGIILS 120
  121 VARNKEALLC GRLTVGLGLG IASMTVPVYI AEVSPPDLRG QLVTVNTLFI TGGQFIASVV 180
  181 DGAFSYLPHD GWRFMLGLSV VPAALQFLGF LFLPESPRWL LQKGFTQNAL LVLRQIRGDV 240
  241 DVEEEFESIR CSIQEEQRDV AGGPVLWRML ASPPARRALI VGCGLQMFQQ LAGINTVIYY 300
  301 SSLFTCTAVS LMVLAAGFLL SAQASPPVTF HPSNPSIHNS TCGNYGFCES CMLDPDCGFC 360
  361 YGLNATAVVQ SSCVPVDPAN TETAALGRCF NGTQKASSVF WAYNYCPTPY SWVVLLGLIL 420
  421 YLAFFAPGMG PMPWTVNSEI YPLWARSTGN ACSAGVNWIC NVLVSLTFLH VAQYLTYYGA 480
  481 FFLYAALALL GFVFVSGCLP ETKGLRLEEI ESLFSRRLCS CGAHTDQYMR VNGGNSRSDE 540
  541 DEDEEE