YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68389434
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	145	0.97
Transmembrane Helix	146	169	0.84
Non-Cytoplasmic	170	196	0.92
Transmembrane Helix	197	218	0.86
Cytoplasmic	219	226	0.74
Transmembrane Helix	227	246	0.91
Non-Cytoplasmic	247	252	0.71
Transmembrane Helix	253	275	0.82
Cytoplasmic	276	287	0.87
Transmembrane Helix	288	310	0.89
Non-Cytoplasmic	311	317	0.77
Transmembrane Helix	318	338	0.92
Cytoplasmic	339	379	0.96
Transmembrane Helix	380	404	0.82
Non-Cytoplasmic	405	420	0.88
Transmembrane Helix	421	443	0.86
Cytoplasmic	444	459	0.84
Transmembrane Helix	460	478	0.78
Non-Cytoplasmic	479	483	0.60
Transmembrane Helix	484	506	0.87
Cytoplasmic	507	516	0.66
Transmembrane Helix	517	540	0.89
Non-Cytoplasmic	541	548	0.70
Transmembrane Helix	549	571	0.86
Cytoplasmic	572	658	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLGGFAGLK EKLNPGKEEL KNNVGDSLGN LQKTQVCVSK WTDESNSCEV EDERNGEGSV  60
   61 MEQVRVAKGK ENRMQPDLFD GKLWQPLLAF SNERRIHSVH QKIDGSNVNE EDNIELTEDG 120
  121 RPVAAPKRSP PLLDCGCFGL PKRYIIAMLS GLGFCISFGI RCNLGVAIVE MVNNNTVYIN 180
  181 GTAVMQPAQF NWDPETVGLI HGSFFWGYIV TQIPGGFISN KLAANRVFGA AIFLTSVLNM 240
  241 FIPSAARVHY GCVMFVRILQ GLVEGVTYPA CHGMWSKWAP PLERSRLATT SFCGSYAGAV 300
  301 IAMPLAGILV QYVGWPSVFY IYGVFGIIWY IFWILLAYNS PAVHPTISEE ERNYIETSIG 360
  361 EGANLMSSTE KFKTPWREFF TSMPVYAIIV ANFCRSWTFY LLLISQPAYF EEVFGFPISK 420
  421 VGILSAVPHM VMTIIVPIGG QLADFLRSRK ILSTTTVRKI MNCGGFGMEA TLLLVVGFSH 480
  481 TRAVAISFLI LAVGFSGFAI SGFNVNHLDI APRYASILMG ISNGVGTLSG MVCPLIVGAL 540
  541 TKHKTRLEWQ HVFVIASMVH YTGVIFYAIF ASGEKQDWAD PENTSDEKCG IIGEDELADE 600
  601 TEPSSDSGLA TRQKTYGTTD NSSGRKQGWK KKRGVTMQAE DDHESNHYEN GEYQTQYQ