YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68373624
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.49
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.48
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	976	0.97
Transmembrane Helix	977	1000	0.85
Cytoplasmic	1001	1009	0.57
Transmembrane Helix	1010	1033	0.88
Non-Cytoplasmic	1034	1042	0.60
Transmembrane Helix	1043	1074	0.67
Cytoplasmic	1075	1075	0.37
Transmembrane Helix	1076	1092	0.46
Non-Cytoplasmic	1093	1108	0.68
Transmembrane Helix	1109	1129	0.89
Cytoplasmic	1130	1137	0.74
Transmembrane Helix	1138	1156	0.93
Non-Cytoplasmic	1157	1195	0.91
Transmembrane Helix	1196	1217	0.88
Cytoplasmic	1218	1231	0.85
Transmembrane Helix	1232	1254	0.89
Non-Cytoplasmic	1255	1280	0.86
Transmembrane Helix	1281	1300	0.92
Cytoplasmic	1301	1327	0.86
Transmembrane Helix	1328	1347	0.95
Non-Cytoplasmic	1348	1354	0.78
Transmembrane Helix	1355	1376	0.91
Cytoplasmic	1377	1441	0.98
Transmembrane Helix	1442	1465	0.90
Non-Cytoplasmic	1466	1472	0.79
Transmembrane Helix	1473	1495	0.94
Cytoplasmic	1496	1503	0.93
Transmembrane Helix	1504	1526	0.90
Non-Cytoplasmic	1527	1531	0.89
Transmembrane Helix	1532	1553	0.90
Cytoplasmic	1554	1591	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSTELTFLM DCNVSLLFFQ GTASVARAWS ATFDSLLAQK ISTFFKAFMS FPDTQNVLAK  60
   61 YPDVFALILV MLLTAVQSHF TSGNASNRSV QTEKDITSVT DCKVDVDAVP SLQALASADT 120
  121 SGLMSEDLKN STFDVTQDLK EPSDNGVNVT VDLQNIKEKN GTFDLTHNVK DPSDSGTTAT 180
  181 ADLPNIKEKN STFNMTQDSK EQPDTGEIKT VELQNIKEKN STFDFPKDSK VQSEGSAAVT 240
  241 VDLQNIKDKN GTFNFTEDSN ERSDAHTNTT VDLRNIKDKN DTFNLTQELK EQSNTGTNRT 300
  301 VDQQSIKEKN GTFNFTEDSK EQSDSRTNTT VDLQNIKEKN GTFNFTQDSK ERCDLATNTT 360
  361 VDLQNIKEKN STFDLTQDSK DHCNLGANMT VDVQIKDNTF NVTPEYKEPS DNGISRINGL 420
  421 QNVKEKNNTV DLTHDSGTKE NVDLHNTKRS TVESQEPKES CDANSTVDLD VPNVKTESGS 480
  481 ATVDLVQSHD LKEGPETNVD IPNIEITHAK IISSSFNSAP LSTTTEQPNE KLDGTIDIQD 540
  541 IQPNKKQDGS LNSEDDKRKN SEEAYSKVDI TVEEEQTGSA AFQPSGDISR NSIFSLDETL 600
  601 NMKTNFMFTS TPIVFGKESR FEILRDTKPT PMRKRLSVIN SIEVQSNDEL VCTSNHDGTD 660
  661 AIQTAERSSQ RVSATCPANH TTSESANENK PPTKPPMKRR LPQLSSKISY AKSSLLPPPS 720
  721 SINSSVAVKP KTVRGPQAPH PPNTSSTPLR GNRRTIQMKT RNIAPVKNTA PVSTVKTSVV 780
  781 SSVPGYNFTA VAKPSNSGIP QMKPSGLQPP TRKRLALKTP QTALSSVDSA PSQPSNKSAA 840
  841 LPGMRTRNSL LSSVGQKHSI NDGLPSAKRK RIGPAASVEC DGLHPAEGEH QSGECCVNCL 900
  901 QHKEKLESVL QELKVLRSAC KNWGPLHEKL DAFIFIPVSS TSSSIMTKNK LASFGKMLLR 960
  961 RRVLDDSPVE SHFARCLTTL DLIALGVGAT LGAGVYVLAG EVAREKAGPA IVLSFLIAAL1020
 1021 SSVLAGLCYA EFGARVPKTG SAYVYSYVTV GEIWAFITGW NLILSYVIGT ASVARAWSAT1080
 1081 FDSLLAQKIS TFFKAFMSFP DTQNVLAKYP DVFALILVML LTGLLAFGVS ESALVNKIFT1140
 1141 GINLVVLTFV IISGFVKGDT ANWNLTVEDY INRTNITGAQ KIEKEFGSGG FAPFGLNGVL1200
 1201 SGAATCFYAF VGFDCIATTS EEAKNPMRSI PIGIVASLLI CFFAYFGVSA ALTLMMPYYM1260
 1261 LDKHSPLPQA FDYVGWGPAR YIVSVGSLCA LSTSLLGSMF PMPRVIYAMA EDGLLFRFLS1320
 1321 RMHKKTKTPA LATLVSGIVA ALMAFLFDLD ALVDLMSIGT LLAYTLVAVC VLILRYQPSR1380
 1381 LGSSGADVKP VELQRLEAKA VMDVDSGDEY SQDMETIPLK KRFSIRMLVQ PICDVPTKIS1440
 1441 GIIVYSACGT ISVLFTLLCL VLSVCLEQVA MGHPLFICLV VLLSVLSTVC IVVIWRQPQS1500
 1501 KEALTFKVPL LPILPLISIF VNIYLMMQMS GATWIRFAVW MAIGFLIYFA YGIRHSSEGK1560
 1561 NNSPQKFEPI LQGKKPIYLA EDGSENEGAT P