YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190339806, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.97
Transmembrane Helix	47	66	0.93
Non-Cytoplasmic	67	75	0.79
Transmembrane Helix	76	96	0.92
Cytoplasmic	97	115	0.87
Transmembrane Helix	116	138	0.88
Non-Cytoplasmic	139	208	0.95
Transmembrane Helix	209	230	0.93
Cytoplasmic	231	238	0.91
Transmembrane Helix	239	261	0.91
Non-Cytoplasmic	262	288	0.94
Transmembrane Helix	289	312	0.85
Cytoplasmic	313	320	0.88
Transmembrane Helix	321	343	0.90
Non-Cytoplasmic	344	375	0.91
Transmembrane Helix	376	402	0.76
Cytoplasmic	403	422	0.93
Transmembrane Helix	423	445	0.90
Non-Cytoplasmic	446	453	0.89
Transmembrane Helix	454	477	0.89
Cytoplasmic	478	493	0.94
Transmembrane Helix	494	514	0.93
Non-Cytoplasmic	515	533	0.89
Transmembrane Helix	534	558	0.87
Cytoplasmic	559	591	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHQEQVIAH GNLCAPGPPN NAGYNSNPVP VIIQTESRDK WSKKMDFLLS VIGFAVDLGN  60
   61 VWRFPYICYQ NGGGAFLIPY VLMAVFGGVP LFYMELALGQ FHRTGAISIW KHICPIFKGI 120
  121 GFAICIIALY VSFYYNTIIA WALFYFYSSF SSTLPWTSCD NDWNTENCTN YFGKDNVTWT 180
  181 NYSRSPAEEF YTRNVLAVHE SSGLGNVGYI RWQLMLCLFL IFTIVYFSLW KGVKTSGKVV 240
  241 WVTATLPYVV LLILMIRGAT LPGAWKGVVF YLNPKWEKLK ETSVWVDAAA QIFFSLGPGF 300
  301 GVLLALSSYN PFTNNCYRDA IVTSLVNCLT SFVSGFVIFT VLGYMAEQRN VNVEDVARDK 360
  361 GPSLLFITYP EAIANMVGST FFAIIFFVMM ITLGLDSTFG GLEAIITAVM DEYPDVLSHR 420
  421 RELFVLGLVV VCFLGSLSTL TKGGAYVVKL LEEFGVGSSI IAIVFLEATA VSWFYGINRF 480
  481 SNDIKSMLGY TPGLFWKVCW VAISPAFLAY IIISSLLNPQ TLTLFDYEFP DWSITVGYII 540
  541 GASSFIWIPI YMVYKLVWTP GSLKQRLAVC LRPERTLPDI HTDGMSLSPV P