YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68365042
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	462	0.65
Transmembrane Helix	463	497	0.51
Cytoplasmic	498	498	0.20
Transmembrane Helix	499	533	0.57
Non-Cytoplasmic	534	534	0.32
Transmembrane Helix	535	569	0.59
Cytoplasmic	570	570	0.20
Transmembrane Helix	571	605	0.59
Non-Cytoplasmic	606	606	0.32
Transmembrane Helix	607	641	0.60
Cytoplasmic	642	642	0.22
Transmembrane Helix	643	677	0.57
Non-Cytoplasmic	678	678	0.38
Transmembrane Helix	679	713	0.55
Cytoplasmic	714	714	0.25
Transmembrane Helix	715	748	0.55
Non-Cytoplasmic	749	759	0.46
Transmembrane Helix	760	784	0.69
Cytoplasmic	785	790	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTALTQLHM SDNLIEENEE SKEEEHHVKI EEKTHLQTDG ILKRRDKNCL TCTQCGKSFS  60
   61 QSSSLNLHMR IHTGEKPFTC TQCGKSFSQS SSLNLHMRIH TGEKPFTCTQ CGKCFSQSSN 120
  121 LNQHMRIHTK EKPFTCTYCG KSFSLSSSLN IHMRIHTGEK PFACTQCGKS FSCLSHLNHH 180
  181 KWIHTGEKPF TCSQCGKSFS QSSSLNIHMR IHTGEKPFTC TQCGKSFSQS SSLNIHMRIH 240
  241 TGEKPFTCTQ CGKSFNCSSL LNKHMKIHTG EKPFACTQCG KSFNCSSLLN KHMKIYTGEK 300
  301 PFACTQCGKS FSHSSSLNRH IMRHTGEKPF MFNHQHGQER NLCSPRNTSP SSTTPSSAWK 360
  361 PTRYQPSNKR PKAYLLYFSK DTISISCHSK SPPTFSRYMC MWWIYWEHPY LLKNAPEAPE 420
  421 DIEDIEECII GNVDCPFNNF RAITSRCIAS AFSNGVASGF SNGIASTFSN GVASAFSNGV 480
  481 ASAFSNGVAS AFSNGVASAF SNGVASAFSN GVASAFSNGV ASAFSNGVAS AFSNGVASAF 540
  541 SNGVASAFSN GVASAFSNGV ASAFSNGVAS AFSNGVASAF SNGVASAFSN GVASAFSNGV 600
  601 ASAFSNGVAS AFSNGVASAF SNGVASAFSN GVASAFSNGV ASAFSNGVAS AFSNGVASAF 660
  661 SNGVASGFSN GVASGFSNGV ASGFSNGVAS GFSNGVASGF SNGVASGFSN GVASGFSNGV 720
  721 ASGFSNGVAS GFSNGVASGF SNGVASGFSN GVASGFSNGV ASAFSNGVTL AFSSGIPSVL 780
  781 SSGIPISCSL