YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPT3L_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGYWAVLFP VLKVWFSCVI VLIMLPAMFG ISLGITETYM KLLIKTLEWA THRIQRASRA  60
   61 EEILKESASN GLIQRDNSSL EQEIEELRRN RPKSADRGDF TLSDVLYFSR KGFESIVEDD 120
  121 VTQRFTSEEL VSWNLLTRTN NNFQYISLRL TVLWVVGVVV RYCILLPLRI TLTTIGLTWL 180
  181 VIGTTTVGFL PNCRVKNWLS ELVHLMCYRI CARGLSATIH FHNKQNRPKK GGICVANHTS 240
  241 PIDVVILAND GCYAMVGQVH GGLMGVLQRA MERSCPHIWF ERSEMRDRHL VTQRLKDHVN 300
  301 AKTKLPILIF PEGTCINNTS VMMFKKGSFE IGGTIYPVAI KYDPQFGDAF WNSSKYSIMS 360
  361 YLLRMMTSWA IVCNVWYLPP MTHEEGEDAV QFANRVKSTI AQQGGLVDLA WDGGLKRAKV 420
  421 KDSFKEQQQK KYSHMVVGED SSD

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.78
Transmembrane Helix	12	35	0.89
Cytoplasmic	36	144	0.81
Transmembrane Helix	145	165	0.82
Non-Cytoplasmic	166	171	0.53
Transmembrane Helix	172	193	0.79
Cytoplasmic	194	360	0.67
Transmembrane Helix	361	378	0.36
Non-Cytoplasmic	379	443	0.60