YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|79158674, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATYLSLLLL FVWVSTSSSN PTSTVASEDP NNQTPAENPT SPAATADPTN QNPAEDPRNP  60
   61 APAEDSRKPA PTEDPTSMAP TEGSTSEAPT ENLTAPTEGA TPVPRKTPAP MKPTKKPTQP 120
  121 SKENIDKSEV KESPKDPVVI SPIRVTEKPL KPSLDLNGRT DNILDYQSDD YDSNLCSGRP 180
  181 VSGLTTLRNG TIVVFRGHYF WTLDKQRNPD PPQLITQVWG IPSPIDTVYT RCNCQGKTYF 240
  241 FKGKNYWRFE NGAMDPGFPK PISEGFGQIG HITAALSIPE YRSRKESVIF FKRGGMAQKY 300
  301 TYQVTPNCGR RPKIPVITVR MRTRRQTAAA LGQVINISRT WRGFPTMVTS SVSVPSRVKE 360
  361 GYKYYVFSQR NYYSMKMERE KPVILKPVTG PKENPATSFF KCKDTQKI

Type	Start	End	Confidence
Signal Peptide	1	26	0.89
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	408	0.99