YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68353858, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVATGDPAD EAAALPGQPQ DTYDPEPDHE CCERVVINIS GLRFETQLKT LSQFPETLLG  60
   61 DPKKRMRYFD PLRNEYFFDR NRPSFDAILY YYQSGGRLRR PVNVTLDIFS EEIRFYELGE 120
  121 EAIEMFREDE GFIKEEEKLL PENEFQRQVW LLFEYPESSG PARIIAIISV MVILISIVSF 180
  181 CLETLPVFRN EETDMHKAYR TDSNSTISYT STYFTDPFFI LETLCIIWFS FEFLVRFFAC 240
  241 PSKAGFFVNI MNIIDIVAII PYFITLGTEL AEKAEDGQQG QQAMSLAILR VIRLVRVFRI 300
  301 FKLSRHSKGL QILGQTLKAS MRELGLLIFF LFIGVILFSS AVYFAEADEP DSQFVSIPDA 360
  361 FWWAVVSMTT VGYGDMVPTT IGGKIVGSLC AIAGVLTIAL PVPVIVSNFN YFYHRETEGE 420
  421 EQAQYLNVTS VPKIDSSEDL KKSRSGSTMS KSDYMEIQEA VNNSNEDFRE ENIKTANCTL 480
  481 ANTNYVNITK MLTDV

Type	Start	End	Confidence
Cytoplasmic	1	163	0.95
Transmembrane Helix	164	186	0.86
Non-Cytoplasmic	187	217	0.91
Transmembrane Helix	218	238	0.89
Cytoplasmic	239	245	0.80
Transmembrane Helix	246	266	0.88
Non-Cytoplasmic	267	282	0.77
Transmembrane Helix	283	300	0.82
Cytoplasmic	301	323	0.89
Transmembrane Helix	324	345	0.93
Non-Cytoplasmic	346	359	0.80
Transmembrane Helix	360	377	0.78
Cytoplasmic	378	384	0.63
Transmembrane Helix	385	406	0.88
Non-Cytoplasmic	407	495	0.81