YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MSBA_SYNAS
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGNRGCKPR RFEGNQRMDI FKRLLKLARP HAPRFAVAMV CMLIAGALTS SLAFLVKPAL  60
   61 DDIFLDRNAE MLKWIPLAII LIYLVKGGCS YFQAILMSFI GQRIVADLRN RLYEQIQKQS 120
  121 LSFFSKNPTG VLMSRITNDV NSIQGTVSDA VTSLMKDSFT LICLVFVIFY RDWQLAIIAM 180
  181 IVFPLTIYPI AKFGQKMRSV ATRTQVTMGS LTTLLQETIS GTRIVRAFCM EAHENQRFAR 240
  241 ENEKLMHLAL KSVSINALSS PFMEFLGGIG IAAIIFYGGY QVIKGSSTPG TFFSFLTALI 300
  301 MLYEPVKRLT NVNNTIQQGI AGAQRVFSII DLVPDIVDRD EAVELPRISE KIEIRNISFA 360
  361 YDDTPVLRNI NLTIRAGEVV AFVGMSGGGK TTLVNLIPRF YDVTAGQILI DGHDIRDVSL 420
  421 ISLRRQIGIV TQQTILFNDT VRNNIAYGSQ GCSEKEIIEA ARAANAHDFI VNLPEGYDTV 480
  481 IGELGTKLSG GERQRISIAR ALLKNAPILI LDEATSSLDT EAEMEVQEAL ERLMKGRTTL 540
  541 VIAHRLSTIR NADRIVVLVK GEIVEEGAHE TLLARRGEYY KLHQLQFKED KVGEEVGRND 600
  601 S

Type	Start	End	Confidence
Cytoplasmic	1	34	0.84
Transmembrane Helix	35	56	0.93
Non-Cytoplasmic	57	73	0.84
Transmembrane Helix	74	100	0.77
Cytoplasmic	101	152	0.80
Transmembrane Helix	153	170	0.55
Non-Cytoplasmic	171	174	0.55
Transmembrane Helix	175	194	0.78
Cytoplasmic	195	254	0.81
Transmembrane Helix	255	280	0.79
Non-Cytoplasmic	281	286	0.56
Transmembrane Helix	287	303	0.59
Cytoplasmic	304	601	0.51