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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|62661719
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPGFISHQF WMYRVGLRFP KTTLSLRLPV KLQNXXAAAA GAWAHLQPSE GTSRSLAEET  60
   61 PGDPPSFASG RRDSESWRAF RCIDALLMMA EHPPLLDTAQ ILSSDISLLS APIVSADGTQ 120
  121 QVILVQVNPG EAFTIRREDG QFQCITGPAQ VPMMSPNGSV PPIYVPPGYA PQVIEDNGVR 180
  181 RVVVVPQSPE FHPGGHTVIH RSPHPPLPGF IPVPTMMPPP PRHMYSPVTG AGDMATQYMP 240
  241 QYQSSQVYAD VDAHSTHGRS NFRDERSTKT YERLQKKLKD RQGTQKDKMS SPPPSPQKCP 300
  301 SPISEHNGLI KGQNTSGVNT GSARNRSGRG RGCTQVDQEI EEKDEETKAF EAFLSNIVRP 360
  361 VASDIQARTV LLTWSPPSSF VNGEVTETTV PEFFNYEILV SSTGKEGKYR SVYVGEETSV 420
  421 TLNDLKPATD YHAKVQAESN SIKGIPSEAE SFTTLSCEPD TPNAPRIANR TKNSLTLQWK 480
  481 APSDNGSKIQ SFILEWDEGK GSGEFCQCYM GSQKQFKITK LSPAMGCKFR LSAKNDYGVS 540
  541 DFSEEVLYYT SGCAPSVPAS PVLTKAGVTW LSLQWTKPSG TPSDEGISYI LEMEEETSGY 600
  601 GFKPKYDGED LAYTVKNLRR STKYKFKVIA YNSEGKSSPS EVVEFSTCPD KPGVPAKPSV 660
  661 KGKVHSHGFK ITWDPPRDNG GAPINKYVVE MAEGSNGSKW DMIYSGATRE HLCDRLTPGC 720
  721 YYRLRVYCIS DGGQSAVSES LLVQTPAVPP GPCLPPRLQG RPKAKEIQLR WGPPQVDGGS 780
  781 PISCYAVEMT PADKDEPRDV YQGSEVECTV SSLLPGKTYS FRLRAANRIG FGPFSEKYDI 840
  841 TTAPGPPDQC RPPQVTCRSA TCAQVNWEIP LSNGTDITEY RLEWGGVEGS MQICYCGPGL 900
  901 SCELKGLSPA TTYYCRVQAL SVVGAGPFSE VVACVTPPSV PAIVTCLQEI RDDDIEYPHY 960
  961 SPSTCLAISW EEPYDHGSEI LAYSIDLGDK QPLTVGKVTS YVINSLQPDT TYRIRIQALN1020
 1021 SLGAGPFSHT IKLKTKPLPP DPPRLECVAF NHQNLKLKWG EGTPKTLATD AVQYHLQMED1080
 1081 KNGRFVSLYR GPCHTYKVQR LSESTSYKFC IQACNEAGEG PLSQEYVFTT PKSVPAALKA1140
 1141 PKIEKINDHI CEITWEYLQP MKGDPVIYNL QVMVGKDSEF KQIYRGPDTS FRYSSLQLNC1200
 1201 EYRFRVCAIR QCQDPAGHQD LVGPYSTTVF FISQRTEPLA SSNRDTVDSA RTRRTLSDEQ1260
 1261 CAAVILVLFA FFSILIAFII QYFVIK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle