YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62653755, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGRSGYRAL PLGDFDRFQQ SSFGFLGSQK GCLSPEPGGV GPGADAPESW PSCLCHGLIS  60
   61 FLGFLLLLLT FPISGWFALK IVPTYERMIV FRLGRIRNPQ GPGMVLLLPF IDSFQRVDLR 120
  121 TRAFNVPPCK LASKDGAVLS VGADVQFRIW DPVLSVMAVK DLNAATRMTA HNAMTKALLR 180
  181 RPLQEIQMEK LKIGDQLLLE INDVTRAWGL EVDRVELAVE AVLQPPQDSL AVPSLDSTLQ 240
  241 QLALHFLGGS MTSVGRVPSP GSDTLEMINE VEPPASRAGA GTEPSPKQPV AEGLLTALQP 300
  301 FLSESLVSQV GACYQFNVLL PSGTQSIYFL DLTTGQGRVG HGVPDGIPDV VVEMAEADLQ 360
  361 ALLCKELRPL GAYMSGRLKV KGDLAVVMKL EAVLKALK

Type	Start	End	Confidence
Cytoplasmic	1	56	0.62
Transmembrane Helix	57	79	0.87
Non-Cytoplasmic	80	398	0.78