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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|62653602, gi|...
Protein type: Transmembrane
Type Confidence: 0.58
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGAGEPRRE EPPPCAGLRS RESGAPSAGG WERAERGRGA AARPATGPPP RRKGPLYGMW  60
   61 LVTFLLLLDS LHKARPEDVG TSLYFVNDSL QHVTFSSSVG VVVPCPAAGS PSAALRWYLA 120
  121 TGDDIYDVPH IRHVHANGTL QLYPFSPSAF NSFIHDNDYF CTAENAAGKI RSPNIRIKAV 180
  181 FREPYTVRVE DQRSMRGNVA VFKCLIPSSV QEYVSVVSWE KDTVSITPEN RFFITSHGGL 240
  241 YISDVQKEDA LSTYRCITQH KYSGETRQSN GARLSVTDPA ESIPTILDGF HSQEVWTGHA 300
  301 VELPCAASGY PIPAIRWLKD GRPLPADSRW AKRITGLTIS DLRTEDSGTY ICEVTNTFGS 360
  361 AEANGVLTVI DPLHVTLTPK KLKTGIGSTV ILSCALTGSP EFTIRWYRNT ELVLPGEAIS 420
  421 IRGLSNETLL ISSAQKSHSG AYQCFATRKA QTAQDFAIIV LEDGTPRIVS SFSEKVVNPG 480
  481 EQFSLMCAAK GAPPPTVTWA LDDEPVVRDG SHRTNQYTMS DGTTISHMNV TGPQIRDGGV 540
  541 YRCTARNSVG SAEYQARINV RGPPSIRAMR NITAVAGRDT LINCRVIGYP YYSIKWYKDA 600
  601 LLLPDNHRQV VFENGTLKLT DVQKGMDEGE YLCSVLIQPQ LSISQSVHVA VKVPPLIQPF 660
  661 EFPPASIGQL LYIPCVVSSG DMPIRITWRK DGQVIISGSG VTIESKEFMS SLQISSVSLK 720
  721 HNGNYTCIAS NAAATVSRER QLIVRVPPRF VVQPNNQDGI YGKAGVLNCS VDGYPPPKVM 780
  781 WKHAKGSGNP QQYHPVPLTG RIQILPNSSL LIRHVLEEDI GYYLCQASNG VGTDISKAMF 840
  841 LTVKIPAMIT SHPNTTIAIK GHAKELNCTA RGERPIIIRW EKGDTVIDPD RVMRYAIATK 900
  901 DNGDEVVSTL KLKPADRGDS VFFSCHAINS YGEDRGLIQL TVQEPPDPPE LEIREVKARS 960
  961 MNLRWTQRFD GNSIITGFDI EYKNKSDSWD FKQSTRNISP TINQANIVDL HPASVYSIRM1020
 1021 YSFNKIGRSE PSKELTISTE EAAPDGPPMD VTLQPVTSQS IQVTWKAPKK ELQNGIIRGY1080
 1081 QIGYRENSPG SNGQYSIVEM KATGDSEVYT LDNLKKFAQY GVVVQAFNRA GTGPSSSEIN1140
 1141 ATTLEDVPSQ PPENVRALSI TSDVAVISWS EPPRSTLNGV LKGYRVIFWS LYVDGEWGEM1200
 1201 QNVTTTRERV ELRGMEKFTN YSVQVLAYTQ AGDGVRSSVL YIQTKEDVPG PPAGIKAVPS1260
 1261 SASSVVVSWL PPTKPNGVIR KYTIFCSSPG SGQPAPSEYE TSPEQLFYRI AHLNRGQQYL1320
 1321 LWVAAVTSAG RGNSSEKVTI EPAGKAPAKI ISFGGTVTTP WLKDVRLPCN SVGDPAPAVK1380
 1381 WTKDSEDSAI PVSLDGHRLI HTNGTLLLRA VKAEDSGYYT CTATNTGGFD TIIVNLLVQV1440
 1441 PPDQPRLTVS KTSASSITLT WIPGDNGGSS IRGFVLQYSV DNSEEWKDVF ISSSERSFKL1500
 1501 DSLKCGTWYK VKLAAKNSVG SGRISEIIEA KTHGREPSFS KDQHLFTHIN STHARLNLQG1560
 1561 WNNGGCPITA IVLEYRPKGT WAWQGVRANS STEVFLTELR EATWYELRMR ACNSAGCGNE1620
 1621 TAQFATLDYD GSTIPPIKSA QGEGDDVKKL FTIGCPVILA TLGVALLFVV RKKRKEKRLK1680
 1681 RLRDAKSLAE MLISKNNRSF DTPVKGPPQG PRLHIDIPRV QLLIEDKEGI KQLGDDKATI1740
 1741 PVTDAEFSQA VNPQSFCTGV SLHHPALIQS TGPLIDMSDI RPGTNPVSRK NVKSAHSTRN1800
 1801 RYSSQWTLTK CQASTPARTL TSDWRTVGSQ HGVTVTESDS YSASLSQDTD KGRNSMVSTE1860
 1861 SASSTYEELA RAYEHAKLEE QLQHAKFEIT ECFISDSSSD QMTTGTNENA DSMTSMSTPS1920
 1921 EPGICRFTAS PPKPQDADRG KNVAVPIPHR ANKSDYCNLP LYTKSEAFFR KADGREPCPV1980
 1981 VPPREASMRN LTRAYHTQAR HLTLDPASKP LGLPHPGATA ATATATLPQR TLAMPAPPAG2040
 2041 TAPPAPGPTP SEPSAPPSAA PPAPSTEPPR AGGPHTKMGG SRDSLLEMST PGVGRSQKQG2100
 2101 AGAYSKSYTL V

YRC Informatics Platform - Version 3.0
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