YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62648687
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	67	0.77
Transmembrane Helix	68	94	0.71
Non-Cytoplasmic	95	97	0.41
Transmembrane Helix	98	115	0.55
Cytoplasmic	116	144	0.75
Transmembrane Helix	145	165	0.90
Non-Cytoplasmic	166	171	0.65
Transmembrane Helix	172	191	0.82
Cytoplasmic	192	197	0.78
Transmembrane Helix	198	218	0.84
Non-Cytoplasmic	219	225	0.77
Transmembrane Helix	226	244	0.93
Cytoplasmic	245	256	0.82
Transmembrane Helix	257	278	0.70
Non-Cytoplasmic	279	303	0.75
Transmembrane Helix	304	327	0.84
Cytoplasmic	328	343	0.70
Transmembrane Helix	344	367	0.70
Non-Cytoplasmic	368	375	0.44
Transmembrane Helix	376	397	0.85
Cytoplasmic	398	400	0.41
Transmembrane Helix	401	422	0.88
Non-Cytoplasmic	423	442	0.51
Transmembrane Helix	443	470	0.88
Cytoplasmic	471	656	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGAKRKKRS VLWGKMHTPH REDIKQWCKR RLPILEWAPQ YNLKENLLPD TVSGVLLAVQ  60
   61 QVTQGLSFAI LSSVHPVFGL YGSLFPAIIY AIFGMGRHVA TGTFALTSLI SANAVERLVP 120
  121 QSNRNLTTQS NSSVLGLSEF ELQRIGVAAA VSFLGGVIQL VMFVLQLGNA TFLLTEPVIS 180
  181 AMTTGAATHV VTSQVKYLLG IKMPYISGPL GFFYIYAYVF ENIKSVQLEA LLLSLLSIVV 240
  241 LVLVKELNEQ FKRKIKVVLP VDLVLIIAAS FACYCTNMEN TYGLEVVGRI PKGIPPPRAP 300
  301 PMNILSAVLT EAFGVALVGY VASLALAQGS AKKFKYSVDD NQEFLAHGLS NVIPSFLFCI 360
  361 PSAAAMGRTA GLYSTGAKTQ VACLISCIFV LIVIYAIGPL LYWLPMCVLA SIIVVGLKGM 420
  421 LIQFRDLKKY WNVDKIDWGI WISTYIFTIC FAANVGLLFG VVCTIAIVLG RFPRAKTLSI 480
  481 TDMKEMELKV KTETYDENSQ QIKIISINNP LVFLNAKKFS ADLMKIILKE TDGSQALDDV 540
  541 SKCEQNTLLS PLPNGSCTEE ASQPCPSEKY SLVLNCSGLT FFDYTGVSTL VELYLDCKSR 600
  601 SVDVFLANCT ASLIKAMTYY GDLDTEKPIF FDSVATAISV IQSNKNLSKD TDHSEV