YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62647276
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTASVLLHPR WIEPTVMFLY DNGGGLVADE LNKNMEGAAA AAAAAAAAAA AGAGGGGFPH  60
   61 PAAAAAGGNF SVAAAAAAAA AAAANQCRNL MAHPAPLAPG AAAAYSSAPG EAPPTAAAAA 120
  121 AAAAAAAAAA AAASSSGGPG PAGPAGAEAA KQCSPCSAAA QSSSGPAALP YGYFGSGYYP 180
  181 CARMGPHPNA IKSCAQPASA AAAFADKYMD TAGPAAEEFS SRAKEFAFYH QGYAAGPYHH 240
  241 HQPVPGYLDM PVVPGLGGPG ESRHEPLGLP MESYQPWALP NGWNGQMYCP KEQTQPPHLW 300
  301 KSTLPDVVSH PSDASSYRRG RKKRVPYTKV QLKELEREYA TNKFITKDKR RRISATTNLS 360
  361 ERQVTIWFQN RRVKEKKVIN KLKTTS

Type	Start	End	Confidence
Cytoplasmic	1	36	0.84
Transmembrane Helix	37	57	0.85
Non-Cytoplasmic	58	62	0.62
Transmembrane Helix	63	84	0.82
Cytoplasmic	85	89	0.61
Transmembrane Helix	90	108	0.32
Non-Cytoplasmic	109	114	0.39
Transmembrane Helix	115	135	0.71
Cytoplasmic	136	386	0.60