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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CE39373
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFDRRHVSL SYFFLVFFLL FIFSGINFQS FLQLLHIFKM ASNSTNSKKQ NKSTEEPPSS  60
   61 VQKLLASLQQ AQNKSDLSEQ PSTSKPKKNE KRKKAVAQAP ASAPAPGPEE KKKQPKRASV 120
  121 GARMQQQAEN ARISQTKRPR QVSTSKGSSR NTTAPEQQNY QQQQQQYKGP RIPTDILDEL 180
  181 EFRFISNMVE CEINDNIRVC FHLELAHWYY IDHMVEDDKI SGCPNVGSRD FNFQMCQHCR 240
  241 VLRKYAHRAD EVLAKFREYK STVPTYGAIL VDPEMDHVVL VQSYFAKGKN WGFPKGKINQ 300
  301 AEPPRDAAIR ETFEETGFDF GIYSEKEKKF QRFINDGMVR LYLVKNVPKD FNFQPQTRKE 360
  361 IRKIEWFKID DLPTDKTDEL PAYLQGNKFY MVMPFVKDIQ IYVQKEKEKL RRRKAEAVQS 420
  421 TPSSSIFSQL FPAQPPPPVP EDATPTRPMY KRLTSEELFS AFKNPPAGEV ARPTLPDMSP 480
  481 AVNGLDTLAV LGICTPLKPG ASLNEFSGAP QNCPMISEEA GSPADPSAEI GFAMPMDLKQ 540
  541 PVVTSDHPWQ HHKISDSSAP PQTLESHQGW LDTQLVNTIM HSPNHPLPPT SNSPATPTAV 600
  601 LGHLIGKPIQ PQAILPQAAT PTALGSAEKP KSSRISLSDN SAFKAISSTQ KQSIPKATAA 660
  661 PPSTEKTRSA SLSGSSQVVG KPARNLFNSV VSPVSSGIQS IQGDGGAWED VWFREQLAAT 720
  721 TTAGTSISSL AASNQELAMI NREETPIEDP YFKQQAYQKA QKAQSLIPAC SQWTNSIKLD 780
  781 IDYVVGPLSF WMQQFSTKSP VSGTGPQLP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle