YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71122485, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.92
Transmembrane Helix	29	46	0.93
Non-Cytoplasmic	47	72	0.94
Transmembrane Helix	73	95	0.82
Cytoplasmic	96	99	0.89
Transmembrane Helix	100	121	0.89
Non-Cytoplasmic	122	128	0.71
Transmembrane Helix	129	149	0.85
Cytoplasmic	150	159	0.77
Transmembrane Helix	160	180	0.87
Non-Cytoplasmic	181	186	0.67
Transmembrane Helix	187	209	0.90
Cytoplasmic	210	295	0.96
Transmembrane Helix	296	314	0.85
Non-Cytoplasmic	315	330	0.85
Transmembrane Helix	331	354	0.86
Cytoplasmic	355	361	0.75
Transmembrane Helix	362	381	0.92
Non-Cytoplasmic	382	390	0.76
Transmembrane Helix	391	413	0.86
Cytoplasmic	414	420	0.85
Transmembrane Helix	421	444	0.88
Non-Cytoplasmic	445	456	0.76
Transmembrane Helix	457	477	0.91
Cytoplasmic	478	498	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVPARVSRR AAAAAARMLL RTARVPRECW FLPTALLCAY GFFANLRPSE PFLTPYLLGP  60
   61 DKNLTERQVF NEIYPVWTYS YLLLLFPVFL ATDYLRYKPV ILLQGLSLIV TWFMLLYAQG 120
  121 LLAVQFLEFF YGIATATEIA YYSYIYTVVD LGMYQKVTSY CRSATLVGFT VGSVLGQILV 180
  181 SVVGWSLFSL NVLSLTCVSV AFAVAWFLPM PQKSLFFHHI PSSCHGVNGL KVQNGGITTD 240
  241 TPASNHLPGW EDIESKIPLN LDEPPVEEPE EPKPDRLRVF KVLWNDFLMC YSSRPLLCWS 300
  301 VWWALSTCGY FQVVNYAQGL WEKVMPSQNA VIYNGGVEAV STLLGASAVF AVGYIKLSWS 360
  361 TWGEVTLFLC SLLIAAAVYI MDTVENIWVC YASYVVFRII YMVLITIATF QIAANLSMER 420
  421 YALVFGVNTF IALALQTLLT LIVVDARGLG LCIITQFLIY ASYFAAISVV FLANGIVSIV 480
  481 KKCRKQEDPN SSPQATTS