YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88900453, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPTVPTIPA IMFIFGVISN LIAIVVLCKS RREQKETTFY TLVCGLAVTD LLGTVLASPV  60
   61 TIATYVKGAW PDGDPLCQYF GFVLLFFSLA GLSIICAMSI ERYIAINHAY FYNDYVDKRL 120
  121 AGVTLLAIYA SNILFCALPS VGFGEVKMQY PQTWCFIDWR TNVSAHAAFS YMYAGCSSLL 180
  181 ILVTVVCNVL VCGALIRMHR RFVRRTSLGT DPQRAADPGR SRSFSRLAGA EIQMVILLIA 240
  241 TSAVVLICSI PLVVQVFLNQ LYKTPVEKRL DKNPDLLAIR FASTNPILDP WIYILLRKAV 300
  301 LSKVVENIKC LFCRSDSRGQ QTQNSLLCIN GQQFSSRDSP SGVSRELQDV SSTSQTSLNL 360
  361 AKAPAGGQNS SSESCRCSSH DGQCKKQSLQ MSITNDSVQE KSI

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.88
Transmembrane Helix	8	28	0.96
Cytoplasmic	29	38	0.88
Transmembrane Helix	39	62	0.90
Non-Cytoplasmic	63	78	0.88
Transmembrane Helix	79	100	0.92
Cytoplasmic	101	119	0.92
Transmembrane Helix	120	143	0.89
Non-Cytoplasmic	144	170	0.94
Transmembrane Helix	171	196	0.88
Cytoplasmic	197	231	0.95
Transmembrane Helix	232	254	0.90
Non-Cytoplasmic	255	403	0.94