YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAC1I_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	76	0.87
Transmembrane Helix	77	97	0.55
Non-Cytoplasmic	98	118	0.65
Transmembrane Helix	119	139	0.78
Cytoplasmic	140	147	0.51
Transmembrane Helix	148	165	0.50
Non-Cytoplasmic	166	206	0.85
Transmembrane Helix	207	230	0.88
Cytoplasmic	231	340	0.96
Transmembrane Helix	341	361	0.87
Non-Cytoplasmic	362	372	0.83
Transmembrane Helix	373	396	0.92
Cytoplasmic	397	631	0.91
Transmembrane Helix	632	652	0.73
Non-Cytoplasmic	653	663	0.41
Transmembrane Helix	664	688	0.61
Cytoplasmic	689	718	0.50
Transmembrane Helix	719	743	0.85
Non-Cytoplasmic	744	794	0.57
Transmembrane Helix	795	819	0.76
Cytoplasmic	820	1164	0.58
Transmembrane Helix	1165	1185	0.78
Non-Cytoplasmic	1186	1204	0.77
Transmembrane Helix	1205	1229	0.86
Cytoplasmic	1230	1264	0.82
Transmembrane Helix	1265	1287	0.88
Non-Cytoplasmic	1288	1366	0.89
Transmembrane Helix	1367	1389	0.93
Cytoplasmic	1390	1445	0.94
Transmembrane Helix	1446	1465	0.89
Non-Cytoplasmic	1466	1480	0.81
Transmembrane Helix	1481	1500	0.87
Cytoplasmic	1501	1514	0.73
Transmembrane Helix	1515	1530	0.53
Non-Cytoplasmic	1531	1573	0.43
Transmembrane Helix	1574	1601	0.71
Cytoplasmic	1602	1663	0.53
Transmembrane Helix	1664	1688	0.76
Non-Cytoplasmic	1689	2201	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSNLPPSS AAAPAPEPGI TEQPGPRSPP PSPPGLEEPL EGTNPDVPHP DLAPVAFFCL  60
   61 RQTTSPRNWC IKMVCNPWFE CVSMLVILLN CVTLGMYQPC DDMECLSDRC KILQVFDDFI 120
  121 FIFFAMEMVL KMVALGIFGK KCYLGDTWNR LDFFIVMAGM VEYSLDLQNI NLSAIRTVRV 180
  181 LRPLKAINRV PSMRILVNLL LDTLPMLGNV LLLCFFVFFI FGIIGVQLWA GLLRNRCFLE 240
  241 ENFTIQGDVA LPPYYQPEED DEMPFICSLT GDNGIMGCHE IPPLKEQGRE CCLSKDDVYD 300
  301 FGAGRQDLNA SGLCVNWNRY YNVCRTGNAN PHKGAINFDN IGYAWIVIFQ VITLEGWVEI 360
  361 MYYVMDAHSF YNFIYFILLI IVGSFFMINL CLVVIATQFS ETKQREHRLM LEQRQRYLSS 420
  421 STVASYAEPG DCYEEIFQYV CHILRKAKRR ALGLYQALQN RRQAMGPGTP APAKPGPHAK 480
  481 EPSHCKLCPR HSPLDPTPHT LVQPISAILA SDPSSCPHCQ HEAGRRPSGL GSTDSGQEGS 540
  541 GSGGSAEAEA NGDGPQSSED GVSSDLGKEE EQEDGAARLC GDVWRETREK LRGIVDSKYF 600
  601 NRGIMMAILV NTVSMGIEHH EQPEELTNIL EICNVVFTSM FALEMILKLA AFGLFDYLRN 660
  661 PYNIFDSIIV IISIWEIVGQ ADGGLSVLRT FRLLRVLKLV RFMPALRRQL VVLMKTMDNV 720
  721 ATFCMLLMLF IFIFSILGMH IFGCKFSLRT DTGDTVPDRK NFDSLLWAIV TVFQILTQED 780
  781 WNVVLYNGMA STTPWASLYF VALMTFGNYV LFNLLVAILV EGFQAEGDAN RSYSDEDQSS 840
  841 SNLEEFDKLP EGLDNSRDLK LCPIPMTPNG HLDPSLPLGA HLGPAGTMGT APRLSLQPDP 900
  901 VLVALDSRKS SVMSLGRMSY DQRSLSSSRS SYYGPWGRSG TWASRRSSWN SLKHKPPSAE 960
  961 HESLLSGEGG GSCVRACEGA REEAPTRTAP LHAPHAHHAH HGPHLAHRHR HHRRTLSLDT1020
 1021 RDSVDLGELV PVVGAHSRAA WRGAGQAPGH EDCNGRMPNI AKDVFTKMDD CRDRGEDEEE1080
 1081 IDYTLCFRVR KMIDVYKPDW CEVREDWSVY LFSPENKFRI LCQTIIAHKL FDYVVLAFIF1140
 1141 LNCITIALER PQIEAGSTER IFLTVSNYIF TAIFVGEMTL KVVSLGLYFG EQAYLRSSWN1200
 1201 VLDGFLVFVS IIDIVVSVAS AGGAKILGVL RVLRLLRTLR PLRVISRAPG LKLVVETLIS1260
 1261 SLKPIGNIVL ICCAFFIIFG ILGVQLFKGK FYHCLGVDTR NITNRSDCVA ANYRWVHHKY1320
 1321 NFDNLGQALM SLFVLASKDG WVNIMYNGLD AVAVDQQPVT NHNPWMLLYF ISFLLIVSFF1380
 1381 VLNMFVGVVV ENFHKCRQHQ EAEEARRREE KRLRRLEKKR RKAQRLPYYA TYCPTRLLIH1440
 1441 SMCTSHYLDI FITFIICLNV VTMSLEHYNQ PTSLETALKY CNYMFTTVFV LEAVLKLVAF1500
 1501 GLRRFFKDRW NQLDLAIVLL SVMGITLEEI EINAALPINP TIIRIMRVLR IARVLKLLKM1560
 1561 ATGMRALLDT VVQALPQVGN LGLLFMLLFF IYAALGVELF GKLVCNDENP CEGMSRHATF1620
 1621 ENFGMAFLTL FQVSTGDNWN GIMKDTLRDC THDERSCLSS LQFVSPLYFV SFVLTAQFVL1680
 1681 INVVVAVLMK HLDDSNKEAQ EDAEMDAEIE LEMAHGLGPC PGPCPGPCPC PWPLAPVLAR1740
 1741 GCPLVLLGAT GARIGRGRCW RRHRESPVPS TRYSPAQETL WLDSVSLIIK DSLEGELTII1800
 1801 DNLSGSVFHH YASPDGCGKC HHDKQEVQLA ETEAFSLNSD RSSSILLGDD LSLEDPTACP1860
 1861 PGRKDSKGEL DPPEPMRVGD LGECFFPLSS TAVSPDPENF LCEMEEIPFN PVQSWLKHDS1920
 1921 SQAPPSPFSP DGSSPLLQMP AEFFHPAVSA SQKGPEKGTG TGTLPKIALQ GSWASLRSPS1980
 1981 VNCTLLRQAT GSDTSLDASP SSSAGSLQTT LEDSLTLSDS PRRALGPPVQ VPGPRASLSP2040
 2041 ATRRRLSLRG RGLFSLRGLR AHQRSHSSGG STSPGCTHHD SMDPSDEEGR GGAGGGGAGS2100
 2101 EHSETLSSLS LTSLFCLPPT LPPPGLTPAR KFNSTSSLAA GPGRPGSTVS ARGLVRSPSW2160
 2161 AADRSKDPPG QAQLVSGLGS SAPGPQPPPG ESTDAASKRK R