YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TRUA_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFPRLWAAL LRAWGRWTAR PGPRVPGLPP MAGNKVPPAL PSHQPDRKGR GGWVWEETEH  60
   61 PAKRVKGGED EEPPRKLPKR KIVLLMAYSG KGYHGMQRNL GSSQFRTIED DLVSALVQAG 120
  121 CIPENHGTDM RKMSFQRCAR TDKGVSAAGQ VVSLKVWLID DILDKINSHL PSHIRILGLK 180
  181 RVTGGFNSKN KCDARTYCYM LPTFAFAHKD RDVQDESYRL SAETLQQVNR LLGCYKGTHN 240
  241 FHNFTSQKGP REPSARRYIL EMYCEEPFVR EGLEFAVIKV KGQSFMMHQI RKMVGLVVAI 300
  301 VKGYAPESVL ERSWGEEKVD VPKAPGLGLV LERVHFEKYN QRFGSDGLHE PLDWAQEEGK 360
  361 VTAFKEQYIY PTIVSTERDE RSMAQWLNTL PIHNFSGTAL GADDTGAKVP SSLEGSEGDG 420
  421 DTD

Type	Start	End	Confidence
Signal Peptide	1	15	0.53
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	423	0.99