YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71724856
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRRIFRFDE DSLNSSSSSS NIASPSSSSS FGPSSIGIQN PTNQSTTTIG DFSLRSSSTQ  60
   61 VDGSGSSISN NHGFFSDLDP TTSTTQENIA DYLRAEIFES VQKVFQNHCS DEDKLRAISE 120
  121 NLHNDEDSPG FLREIIEHLK DKQGEHYDFA LNQFNVIVGG TPPTITSPLE QFEIIPLIPM 180
  181 KIGNLYFSFT NPSLFMLLTL SLVLLLVYFV TKKGGGNSVP NAWQSLVELI YDFVLNPVNE 240
  241 QIGGLSGNVK QKFSPRISVT FTFSLFCNPQ GMIPYSFTVT SHFLITLGLS FSIFIGITIV 300
  301 GFQKNGLHFL SFLLPAGVPL PLAPFLVLLE LIPYCFRALS SGIRLFANMM AGHSSVKILS 360
  361 GFAWTMLCMN DLLYFIGDLG PLFIVLALTG LELGVAISQA HVSTILICIY LNDAINLHQS 420
  421 AYFFIIEQKR V

Type	Start	End	Confidence
Cytoplasmic	1	186	0.58
Transmembrane Helix	187	210	0.84
Non-Cytoplasmic	211	256	0.47
Transmembrane Helix	257	271	0.25
Cytoplasmic	272	278	0.48
Transmembrane Helix	279	302	0.87
Non-Cytoplasmic	303	308	0.52
Transmembrane Helix	309	336	0.76
Cytoplasmic	337	344	0.49
Transmembrane Helix	345	377	0.63
Non-Cytoplasmic	378	378	0.35
Transmembrane Helix	379	411	0.63
Cytoplasmic	412	431	0.63