YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83415192, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.98
Transmembrane Helix	48	69	0.89
Non-Cytoplasmic	70	78	0.86
Transmembrane Helix	79	101	0.89
Cytoplasmic	102	118	0.86
Transmembrane Helix	119	141	0.91
Non-Cytoplasmic	142	217	0.95
Transmembrane Helix	218	236	0.96
Cytoplasmic	237	244	0.83
Transmembrane Helix	245	267	0.90
Non-Cytoplasmic	268	294	0.91
Transmembrane Helix	295	315	0.89
Cytoplasmic	316	325	0.85
Transmembrane Helix	326	349	0.89
Non-Cytoplasmic	350	377	0.91
Transmembrane Helix	378	400	0.82
Cytoplasmic	401	429	0.91
Transmembrane Helix	430	452	0.88
Non-Cytoplasmic	453	460	0.85
Transmembrane Helix	461	485	0.90
Cytoplasmic	486	505	0.93
Transmembrane Helix	506	525	0.97
Non-Cytoplasmic	526	542	0.88
Transmembrane Helix	543	566	0.89
Cytoplasmic	567	625	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQKEKLQCL KDFHKDILKP SPGKSPGTRP EDEAEGKHPQ REKWASKLDF LLSVAGGFVG  60
   61 LGNVWRFPYL CYKNGGGAFL IPYFIFLFGG GLPVFFLEVA LGQFTSEGGI TCWEKLCPIF 120
  121 TGIGYASIVI VSLLNIYYIV ILAWGLYYLF QCFQPELPWA SCNNKWNTEN CVEDTLRRNK 180
  181 TLWAAANATN FTSPVTEFWE RNVLSISDGI EEVGHVKWDL ALCLLAMWVI CFFCVWKGVK 240
  241 STGKVVYVTA TFPFVMLIVL LVRGVTLPGA AEGIKFYLYP NVTRLGDPEV WIDAGTQIFF 300
  301 SYAICLGAMT SLGSYNKYKY NCYRDCLLLG GLNSATSFVS GFAIFSVLGF MAQEQGVDIA 360
  361 DVAESGPGLA FIAYPKAVTM MPLPTFWAIL FFIMLLLLGL DSQFVEVEGQ ITSLVDLYPS 420
  421 FLRKGYRREI FIAIVCFVSY LLGLTMVTEG GMYVFQLFDY YAASGVCLLW VAFFECIAVA 480
  481 WVYGADNFYD AIEEMIGYRP NPWMKWSWTV VTPFLCVGCF IFSLVKYAPL RYNKIYEYPD 540
  541 WSIGVGWTLA LASMICIPMV VVIKIIQSDG PLIERIKAVA APVRGGASSC PQEYQPKSNE 600
  601 LAQPLDPNWN GGLAKPTHTI VETMM