YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82658224, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.72
Transmembrane Helix	16	36	0.93
Non-Cytoplasmic	37	56	0.65
Transmembrane Helix	57	79	0.82
Cytoplasmic	80	86	0.57
Transmembrane Helix	87	106	0.79
Non-Cytoplasmic	107	108	0.50
Transmembrane Helix	109	132	0.78
Cytoplasmic	133	144	0.70
Transmembrane Helix	145	164	0.88
Non-Cytoplasmic	165	175	0.67
Transmembrane Helix	176	195	0.93
Cytoplasmic	196	242	0.97
Transmembrane Helix	243	265	0.92
Non-Cytoplasmic	266	275	0.82
Transmembrane Helix	276	297	0.86
Cytoplasmic	298	308	0.87
Transmembrane Helix	309	330	0.88
Non-Cytoplasmic	331	335	0.68
Transmembrane Helix	336	358	0.89
Cytoplasmic	359	369	0.73
Transmembrane Helix	370	391	0.88
Non-Cytoplasmic	392	400	0.84
Transmembrane Helix	401	425	0.88
Cytoplasmic	426	465	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPSASTNLG YTPPDGGWGW AVVFGSFISI GFSYAFPKSL TIYFKEIQEY FSISYSQIAW  60
   61 VSSIMLATMY AGGPVSSILV NRYGSRPVVI AGGLMVGVAM VTASFGTSIL HLYLCVGVIG 120
  121 GFGLAFDLQP ALTIIGKYFL VKRPMANGIA MAGSPVFLST LAPVNQFLFD QFGWRGSFFI 180
  181 LGGVLFNCCV AGSLMRPIKI PVSKTTEDNI SPQTAGQDDS KPSGCSSKLN QFIDISLFKH 240
  241 RGFLIYLVGN VLMFFGFFAP VVFLAPYAKH QGVDEYSAAF LLSIFALVDM FARPGTGLVA 300
  301 NTKWIRPKIQ YFFSFAVTYN GLCHLMCPLL PGYIGLVVYA VLFGLAFGMV CALLFEVLMD 360
  361 LVGAQRFSSA VGLATIIECG PVLLGPPISG LLVDIFMDYK YMYFACGMMM LAGGVFLFIM 420
  421 NYYNYRWLKK EEKQRNAEEL QIFSTKELAA IDEEIKLSIE EKLKD