YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71064019
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	470	0.61
Transmembrane Helix	471	487	0.55
Non-Cytoplasmic	488	511	0.80
Transmembrane Helix	512	532	0.91
Cytoplasmic	533	550	0.85
Transmembrane Helix	551	571	0.96
Non-Cytoplasmic	572	579	0.90
Transmembrane Helix	580	608	0.79
Cytoplasmic	609	618	0.79
Transmembrane Helix	619	635	0.63
Non-Cytoplasmic	636	640	0.56
Transmembrane Helix	641	661	0.61
Cytoplasmic	662	693	0.81
Transmembrane Helix	694	716	0.80
Non-Cytoplasmic	717	721	0.67
Transmembrane Helix	722	742	0.69
Cytoplasmic	743	1376	0.64
Transmembrane Helix	1377	1398	0.85
Non-Cytoplasmic	1399	1421	0.66
Transmembrane Helix	1422	1444	0.73
Cytoplasmic	1445	1458	0.72
Transmembrane Helix	1459	1482	0.77
Non-Cytoplasmic	1483	1490	0.62
Transmembrane Helix	1491	1510	0.91
Cytoplasmic	1511	1578	0.87
Transmembrane Helix	1579	1601	0.88
Non-Cytoplasmic	1602	1620	0.81
Transmembrane Helix	1621	1650	0.75
Cytoplasmic	1651	1659	0.71
Transmembrane Helix	1660	1682	0.89
Non-Cytoplasmic	1683	1687	0.70
Transmembrane Helix	1688	1706	0.67
Cytoplasmic	1707	1726	0.59
Transmembrane Helix	1727	1743	0.35
Non-Cytoplasmic	1744	1762	0.53
Transmembrane Helix	1763	1779	0.58
Cytoplasmic	1780	1818	0.95
Transmembrane Helix	1819	1841	0.93
Non-Cytoplasmic	1842	1895	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYNDPNLNG QYYSNGDGTG DGNYPTYQVT QDQSAYDEYG QPIYTQNQLD DGYYDPNEQY  60
   61 VDGTQFPQGQ DPSQDQGPYN NDASYYNQPP NMMNPSSQDG ENFSDFSSYG PPSGTYPNDQ 120
  121 YTPSQMSYPD QDGSSGASTP YGNGVVNGNG QYYDPNAIEM ALPNDPYPAW TADPQSPLPI 180
  181 EQIEDIFIDL TNKFGFQRDS MRNMFDHFMT LLDSRSSRMS PEQALLSLHA DYIGGDTANY 240
  241 KKWYFAAQLD MDDEIGFRNM KLGKLSRKAR KAKKKNKKAM QEASPEDTEE TLNQIEGDNS 300
  301 LEAADFRWKS KMNQLSPFEM VRQIALFLLC WGEANQVRFT PECLCFIYKC ASDYLDSAQC 360
  361 QQRPDPLPEG DFLNRVITPL YRFIRSQVYE IVDGRYVKSE KDHNKVIGYD DVNQLFWYPE 420
  421 GIAKIVMEDG TRLIDLPAEE RYLKLGEIPW DDVFFKTYKE TRSWLHLVTN FNRIWIMHIS 480
  481 VYWMYCAYNA PTFYTHNYQQ LVDNQPLAAY KWATAALGGT VASLIQVAAT LCEWSFVPRK 540
  541 WAGAQHLSRR FWFLCVIMGI NLGPVIFVFA YDKDTVYSTA AHVVGAVMFF VAVATLVFFS 600
  601 VMPLGGLFTS YMKKSTRSYV ASQTFTASFA PLHGLDRWMS YLVWVTVFAA KYAESYFFLI 660
  661 LSLRDPIRIL STTSMRCTGE YWWGNKICKV QPKIVLGLMI ATDFILFFLD TYLWYIVVNT 720
  721 VFSVGKSFYL GISILTPWRN IFTRLPKRIY SKILATTDME IKYKPKVLIS QIWNAIIISM 780
  781 YREHLLAIDH VQKLLYHQVP SEIEGKRTLR APTFFVSQDD NNFETEFFPR DSEAERRISF 840
  841 FAQSLSTPIP EPLPVDNMPT FTVLTPHYAE RILLSLREII REDDQFSRVT LLEYLKQLHP 900
  901 VEWDCFVKDT KILAEETAAY ENNEDEPEKE DALKSQIDDL PFYCIGFKSA APEYTLRTRI 960
  961 WASLRSQTLY RTISGFMNYS RAIKLLYRVE NPEIVQMFGG NADGLERELE KMARRKFKFL1020
 1021 VSMQRLAKFK PHELENAEFL LRAYPDLQIA YLDEEPPLSE GEEPRIYSAL IDGHCEILEN1080
 1081 GRRRPKFRVQ LSGNPILGDG KSDNQNHALI FYRGEYIQLI DANQDNYLEE CLKIRSVLAE1140
 1141 FEELGIEQIH PYTPGLKYED QSTNHPVAIV GAREYIFSEN SGVLGDVAAG KEQTFGTLFA1200
 1201 RTLAQIGGKL HYGHPDFINA TFMTTRGGVS KAQKGLHLNE DIYAGMNAVL RGGRIKHCEY1260
 1261 YQCGKGRDLG FGTILNFTTK IGAGMGEQML SREYYYLGTQ LPIDRFLTFY YAHPGFHLNN1320
 1321 LFIQLSLQMF MLTLVNLHAL AHESILCVYD RDKPITDVLY PIGCYNFHPA IDWVRRYTLS1380
 1381 IFIVFWIAFV PIVVQELIER GLWKATQRFF RHILSLSPMF EVFAGQIYSS ALLSDIAVGG1440
 1441 ARYISTGRGF ATSRIPFSIL YSRFAGSAIY MGSRSMLMLL FGTVAHWQAP LLWFWASLSA1500
 1501 LIFAPFIFNP HQFAWEDFFL DYRDYIRWLS RGNNKYHRNS WIGYVRMSRS RVTGFKRKLV1560
 1561 GDESEKSAGD ASRAHRTNLI MAEIIPCAIY AAGCFIAFTF INAQTGVKTT DEDRVNSTLR1620
 1621 IIICTLAPIV IDIGVLFFCM GLSCCSGPLL GMCCKKTGSV MAGIAHGIAV VVHIVFFIVM1680
 1681 WVLEGFSFVR MLIGVVTCIQ CQRLIFHCMT VLLLTREFKN DHANTAFWTG KWYSTGLGYM1740
 1741 AWTQPTRELT AKVIELSEFA ADFVLGHVIL IFQLPVICIP KIDKFHSIML FWLKPSRQIR1800
 1801 PPIYSLKQAR LRKRMVRRYC SLYFLVLIIF AGCIVGPAVA SAHVPKDLGS GLKDTFHNLV1860
 1861 QPRNVSNNDT GSQMSTYKSH YYTHTPSLKT WSTIK