YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78368470, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.87
Transmembrane Helix	57	76	0.82
Non-Cytoplasmic	77	248	0.99
Transmembrane Helix	249	273	0.90
Cytoplasmic	274	294	0.81
Transmembrane Helix	295	317	0.88
Non-Cytoplasmic	318	328	0.76
Transmembrane Helix	329	349	0.96
Cytoplasmic	350	369	0.93
Transmembrane Helix	370	393	0.90
Non-Cytoplasmic	394	411	0.81
Transmembrane Helix	412	433	0.90
Cytoplasmic	434	445	0.83
Transmembrane Helix	446	467	0.88
Non-Cytoplasmic	468	473	0.66
Transmembrane Helix	474	490	0.81
Cytoplasmic	491	501	0.73
Transmembrane Helix	502	523	0.85
Non-Cytoplasmic	524	659	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGDRGVPAD KMSRPSLRQA GATPLVAAPL PSSRADRHRD PHRFGGLLSM DKRNLTIMKK  60
   61 ILFLFLSTLL LIAPGAQSES LFSNSKFDFL KDEPQLMPVD QAFVFDAQQE GNLVKISWVI 120
  121 ADGYYLYRDK LKFTADGATL GEIQLPKGKA HSDEYFGEQQ VYYSYVEVPV ALKEATAEAN 180
  181 ISVTFMGCAE GKLCFPPTTR SAPLTQVAAN AGLLPEAMKA TPVASETASN QAPITQQDSL 240
  241 SQMLSGDNLL WTLVIFFGLG IGLALTPCVF PMYPILSGII VGQGEKLSTG KAFSLSMVYV 300
  301 QGMAITYSLL GLIVASAGMK YQAALQHPAV LVGLAILFLV LSLSMFGLYE LRLPSSWQEK 360
  361 MNRFSNNQKG GNVLGVFVMG IISGLVASPC TTAPLSGALV YVAQTGDLMQ GFLALYVLSM 420
  421 GMGLPLLIIG SSGGKLLPRA GAWMDVIKTV FGFLLIAVSI LMIGRIWTGL VSDLLWALWG 480
  481 VSLTAYLMHQ NKLTEFNWKQ TVRSVLLLLA LLGSFSYGFQ AVMTSLGYQA HTGAVSHKVS 540
  541 HKTIKSLEDL QAEVAAASAQ GKPVMLDLYA DWCVACKEFE KITFVDPEVQ ARLSQMVFLQ 600
  601 ADVTKNDAID IELLEHYEVL GLPTLLMFDA KGEIRDELRV TGFMKPAEFA AHLDHLLAK