YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|127511677, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRQQTSSWL GRAWSGWMSV PLWLQILIGM LLGICAGLGL GEQAVLLKPI GTLFVNTIKM  60
   61 LIVPLVFCSL IVGVTSMQDT AKMGRIGFKS FAFYLGTTSI AITLGLAVGH IMQPGAGLAM 120
  121 TSAESHNAVK EVPSIMETLI NIVPTNPIAA LASGQILQVI VFAVALGIAL VLIGDHGKPA 180
  181 IKVFESLAEA MYKLTDMVMK LAPYGVFGLM AWVAGEYGMD MLMPLIKVIL AVYIGCALHI 240
  241 IGFYSLVLTF VAKLNPMQFF KGISNALAVA YTTSSSAGTL PASMKCASES LGINKKISSF 300
  301 VLPLGTTINM DGTALYQGVT ALFVAQAFGI DLTWVDYITI ILTATLASIG TAGVPGAGLV 360
  361 MLTLVLTTVG LPLEGVAIIA GIDRILDMAR TVVNVSGDLV ATTVIAKSED ELDLEHYNAD 420
  421 AEQSQILAER LDS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	40	0.97
Non-Cytoplasmic	41	56	0.77
Transmembrane Helix	57	77	0.88
Cytoplasmic	78	90	0.86
Transmembrane Helix	91	112	0.94
Non-Cytoplasmic	113	153	0.94
Transmembrane Helix	154	174	0.93
Cytoplasmic	175	196	0.88
Transmembrane Helix	197	215	0.89
Non-Cytoplasmic	216	228	0.73
Transmembrane Helix	229	251	0.91
Cytoplasmic	252	312	0.57
Transmembrane Helix	313	347	0.61
Non-Cytoplasmic	348	348	0.14
Transmembrane Helix	349	382	0.70
Cytoplasmic	383	433	0.80