YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77868036, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQRYIKKIL DARVYDVAIE TPLTEARSLS KRFGNNIMLK REDLQPVFSF KIRGAYNRIA  60
   61 QLSEEQKAKG VICASAGNHA QGVALAAKKL GIKAVIVMPQ TTPEIKVRSV RDHGARVVLK 120
  121 GDAFDEAAAH AQELIQKHGY TYIPPYDDPD VIAGQGTVAM EIMWQFSKPI HAIFICVGGG 180
  181 GLIAGMAAYI KYLRPEIKVI GVEPEDSNCL QAAMKAGERV VLDEVGIFAD GVAVKQIGKY 240
  241 PWEICKDHVD EVITVSTDEI CAAIKDVFED TRSIAEPAGA LGVAGIKKYI EREKIENENL 300
  301 IATLSGANMN FDRLRYVSER TEVGEKREAI LAVTIPEKPG AFKTFINALH KRSITEFNYR 360
  361 YADAQNATIF VGIQIAAGGH GREDLVQDLR ESGYSVVDLT DSDLAKQHIR HMVGGHAPTI 420
  421 TNEKVFQFEF PERPGALLKF LMSLGTRWNI SMFHYRNHGA AYSRVLLGAQ VEDNEVADFE 480
  481 RMLDKVGFRY ENMTGNEAYR LFLGAGNGRS T

Type	Start	End	Confidence
Cytoplasmic	1	169	0.80
Transmembrane Helix	170	190	0.89
Non-Cytoplasmic	191	511	0.87