YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68545559, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.92
Transmembrane Helix	16	37	0.91
Non-Cytoplasmic	38	52	0.77
Transmembrane Helix	53	73	0.88
Cytoplasmic	74	86	0.86
Transmembrane Helix	87	108	0.94
Non-Cytoplasmic	109	149	0.95
Transmembrane Helix	150	170	0.93
Cytoplasmic	171	192	0.89
Transmembrane Helix	193	211	0.89
Non-Cytoplasmic	212	220	0.70
Transmembrane Helix	221	244	0.86
Cytoplasmic	245	257	0.74
Transmembrane Helix	258	278	0.65
Non-Cytoplasmic	279	308	0.62
Transmembrane Helix	309	326	0.64
Cytoplasmic	327	328	0.42
Transmembrane Helix	329	353	0.69
Non-Cytoplasmic	354	354	0.39
Transmembrane Helix	355	378	0.69
Cytoplasmic	379	430	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATPPANLW RRWCAVPLWL QILTGMLLGI GVGLVLGPDA SALKPIGTLF VNTIKMLIVP  60
   61 LVFCSLIVGV TSMQDTARMG RIGFKSFAFY LATTAIAISV GLMVGWLLEP GAGLSLEGHD 120
  121 LSAEVKTAPS VMDTLINIVP TNPVAALASG QILQVIVFAV ALGVALVLIG DHGKPAIKVF 180
  181 ESLAEAMYKL TDMVMKLAPY GVFGLMAWVA GEYGIDMLLP LIKVIIAVYL GCALHILGFY 240
  241 SLVLKLVAGL SPIQFFKGIS NAMAVAFTTS SSAGTLPASM KCASEYLGVN KKISSFVLPL 300
  301 GTTINMDGTA LYQGVTALFV AQAFGVDLTW VDYLTIVLTA TLASIGTAGV PGAGLVMLTL 360
  361 VLTTVGLPLE GVAIIAGIDR ILDMARTVVN VSGDLVATTV IARSEGEIDI AHYNADMETS 420
  421 SEMAQAREDS