YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73918059
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERAPPDGLM NASGTLAGEA AAAGGARGFS AAWTAVLAAL MALLIVATVL GNALVMLAFV  60
   61 ADSSLRTQNN FFLLNLAISD FLVGAFCIPL YVPYVLTGRW TFGRGLCKLW LVVDYLLCAS 120
  121 SVFNIVLISY DRFLSVTRAV SYRAQQGDTR RAVRKMALVW VLAFLLYGPA ILSWEYLSGG 180
  181 SSIPEGHCYA EFFYNWYFLI TASTLEFFTP FLSVTFFNLS IYLNIQRRTR LRLDGGREAG 240
  241 PEPPPDAQPS PPPAPPSCWG CWPKGHGEAM PLHSSGSSSR GTERPRSLKR GSKPSASSAS 300
  301 LEKRMKMVSQ SITQRFRLSR DKKVAKSLAI IVSIFGLCWA PYTLLMIIRA ACHGRCIPDY 360
  361 CVERLGKLEA SLLLPLWMFS GRWRRRKHVC ELDVPWMFNQ ERQNCRGARG WIGRCGLPRP 420
  421 PPSVLQLPAE PRQLLLPAPP PGLGRWPCPA CPVCTIRIWG WVVMG

Type	Start	End	Confidence
Cytoplasmic	1	8	0.70
Transmembrane Helix	9	29	0.67
Non-Cytoplasmic	30	36	0.64
Transmembrane Helix	37	60	0.90
Cytoplasmic	61	70	0.90
Transmembrane Helix	71	92	0.94
Non-Cytoplasmic	93	110	0.84
Transmembrane Helix	111	134	0.85
Cytoplasmic	135	155	0.91
Transmembrane Helix	156	174	0.93
Non-Cytoplasmic	175	198	0.89
Transmembrane Helix	199	222	0.90
Cytoplasmic	223	323	0.99
Transmembrane Helix	324	345	0.88
Non-Cytoplasmic	346	465	0.61