YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|186895067, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDTTTVDTT TVTKTTTGEK KLTASDIRGV FLRSNLFQGS WNFERMQALG FCFSMVPAIR  60
   61 RLYPENSEER KQAIKRHLEF FNTQPFVAAP ILGVTLAMEE QRANGAEIDD AAINGIKVGL 120
  121 MGPLAGVGDP IFWGTVRPVF AALGAGIAMS GSLLGPLLFF VLFNVVRLLT RYYGVAYGYK 180
  181 KGVNIVNDMG GGFLQKLTEG ASILGLFVMG ALVNKWTHVN IPVVVSRITN PAGETTVTTV 240
  241 QTILDQLMPG LVPLLLTFGC MWLLRRKVNA LWIIMGFFAI GIFGYWIGFL AP

Type	Start	End	Confidence
Cytoplasmic	1	79	0.75
Transmembrane Helix	80	98	0.49
Non-Cytoplasmic	99	139	0.53
Transmembrane Helix	140	163	0.90
Cytoplasmic	164	196	0.73
Transmembrane Helix	197	218	0.66
Non-Cytoplasmic	219	242	0.69
Transmembrane Helix	243	263	0.70
Cytoplasmic	264	269	0.79
Transmembrane Helix	270	289	0.96
Non-Cytoplasmic	290	292	0.78